Resolution of batch variations in pyrolysis mass spectrometry of bacteria by the use of artificial neural network analysis.
A simple, but stringent, three group model of bacterial interstrain identity (two cultures of the same strain of Escherichia coli) and difference (a culture of a serologically distinct strain) was used in multiple serial weekly subcultures for five weeks to demonstrate the effect of both growth-related (phenotypic) and machine-related variation on pyrolysis mass spectra. An aliquot of serum from a single sample was included in each pyrolysis batch to distinguish machine drift from culture drift. Conventional principal component (PC) canonical variate (CV) analysis was successful within each pyrolysis batch but the variations between batches precluded the use of data from more than one batch in successful PCCV analysis. In contrast, artificial neural networks (ANNs) trained with data from one batch could be successfully used to identify groups in data from non-contemporaneous pyrolysis batches. Although the ANN method will require validation in more complex settings than this simple model, it is a promising approach to the problem of batch constraint in pyrolysis mass spectrometry.
Freeman
R
R
Regional Public Health Laboratory, Newcastle upon Tyne, UK.
Sisson
P R
PR
Ward
A C
AC
D015373:Bacterial Typing Techniques / Q000295:instrumentation*; D004926:Escherichia coli / Q000737:chemistry*; D013058:Mass Spectrometry / Q000295:instrumentation / Q000379:methods*; D016571:Neural Networks, Computer; D013045:Species Specificity