TransTerm: a database of translational signals.
The TransTerm database of sequence contexts of stop and start codons has been expanded to include approximately 50% more species than last year's release. It now contains 148 organisms and >39 500 coding sequences; it is now available on the World Wide Web. The database includes: (i) initiation and termination sequence contexts organized by species; (ii) summary parameters about the individual sequences (sequence length, GC%, GC3, Nc, CAI) in addition to tables of base frequencies for each species' stop and start codon sequence context; (iii) species codon usage tables; and (iv) summary tables of stop signal frequency.
Dalphin
M E
ME
Department of Biochemistry, University of Otago, Dunedin, New Zealand.
Brown
C M
CM
Stockwell
P A
PA
Tate
W P
WP
D000818:Animals; D001483:Base Sequence; D018387:Codon, Initiator; D018388:Codon, Terminator; D003195:Computer Communication Networks; D016208:Databases, Factual; D006801:Humans; D008969:Molecular Sequence Data; D014176:Protein Biosynthesis
D018387:Codon, Initiator; D018388:Codon, Terminator