title: Characterization of the pTFI91-family replicon of Thiobacillus ferrooxidans plasmids.
abstract: Plasmids found in six strains of Thiobacillus ferrooxidans were mapped and compared in an effort to detect the origin of replication. Four strains yielded an identical 9.8-kb plasmid, pTFI91. Restriction mapping and Southern blot hybridization analysis were used to confirm this finding. Dissimilar plasmids found in two other strains contained a conserved 2.2-kb SacI region common to pTFI91. DNA sequence analysis of this region showed structural features common to bacterial plasmid replicons. A comparison of the pTFI91 origin with those of T. ferrooxidans pTF-FC2 and other broad host range vectors did not show significant homologous DNA sequences. To verify the replication function, a chloramphenicol acetyl transferase marker gene was ligated at the unique sites of pTFI91, and the plasmid was transformed into Escherichia coli DH5 alpha cells but no transformants were identified. To test the replication of pTFI91 independent of DNA polymerase I in E. coli, different restriction fragments of pTFI91 were cloned into pHSG398 (Cmr, ColEI origin) and transformed into the polA1 mutant SF800, but chloramphenicol-resistant transformants were not detected. Electrotransformation of T. ferrooxidans TFI-70 and Pseudomonas putida ATCC 19151 also failed to yield transformants. The results suggested that the pTFI91 plasmid replicon does not function either in E. coli or in P. putida. Since pTFI91 contains the same origin of replication as other plasmids in several other T. ferrooxidans strains, this replicon may be commonly distributed in T. ferrooxidans.
authors.affiliation: Environmental Science Graduate Program, Ohio State University, Columbus 43210-1086, USA.
authors.forename: L
authors.initials: L
authors.lastname: Chakravarty
authors.forename: T J
authors.initials: TJ
authors.lastname: Zupancic
authors.forename: B
authors.initials: B
authors.lastname: Baker
authors.forename: J D
authors.initials: JD
authors.lastname: Kittle
authors.forename: I J
authors.initials: IJ
authors.lastname: Fry
authors.forename: O H
authors.initials: OH
authors.lastname: Tuovinen
mesh_terms: D001483:Base Sequence; D015139:Blotting, Southern; D015500:Chloramphenicol O-Acetyltransferase / Q000235:genetics / Q000378:metabolism; D004256:DNA Polymerase I / Q000235:genetics / Q000378:metabolism; D004269:DNA, Bacterial / Q000235:genetics; D004926:Escherichia coli / Q000235:genetics; D008969:Molecular Sequence Data; D010957:Plasmids / Q000235:genetics*; D016958:Pseudomonas putida / Q000235:genetics; D018741:Replication Origin; D012093:Replicon; D015183:Restriction Mapping; D013855:Thiobacillus / Q000235:genetics*; D014169:Transformation, Bacterial
chemical_list: D004269:DNA, Bacterial; D015500:Chloramphenicol O-Acetyltransferase; D004256:DNA Polymerase I