title: Genetic typing with HUMTH01, HUMVWA31A and HUMFES/FPS short tandem repeat loci, D1S80 variable number tandem repeat locus and HLA-DQ alpha of recent and from XII-XIII centuries spongy bone.
abstract: The genetic analysis of ancient populations through DNA from bone remains, requires use of short sized loci that can be amplified by polymerase chain reaction (PCR) for which the short tandem repeat (STR) loci are most suitable. These techniques can also be applied to genetic identification in forensic casework. In this study three STR loci, HUMFES/FPS, HUMTH01, and HUMVWA31A, were selected to estimate their usefulness when applied to recent and ancient spongy bone DNA typing. In addition, loci D1S80 and HLA DQ alpha were also tested in the analysis of recent spongy bone DNA. The recent remains studied were constituted by ten spongy bone samples of postmortem material from one individual buried for 1 year. The ancient remains are composed by 8 spongy bone samples from the heads of left femurs from a XII-XIII Centuries Basque Country population. Adequate amplification and typing results could only be obtained with cetyltrimethyl ammonium bromide (CTAB)-extracted DNA, without any further purification after precipitation. Genotypes of the one year post-mortem material and those of his son and his wife were obtained at the D1S80, HLA-DQ alpha, and STR loci. In all these systems, no exclusion was observed, with a combined probability of paternity of 0.9997. This demonstrates the reliability of the obtained results. The genetic typing of HUMTH01 in spongy bone from the XII-XIII Centuries Basque Country individuals was also performed. This will allow the genetic analysis of ancient bone remains and therefore, to carry out evolutionary population studies.
authors.affiliation: Departamento de Biología Celular y Ciencias Morfológicas, Facultad de Medicine y Odontología, Universidad del País Vasco, Leioa (Bizkaia), Spain.
authors.forename: M M
authors.initials: MM
authors.lastname: de Pancorbo
authors.forename: A
authors.initials: A
authors.lastname: Castro
authors.forename: S
authors.initials: S
authors.lastname: Alonso
authors.forename: I
authors.initials: I
authors.lastname: Fernández-Fernández
authors.forename: C
authors.initials: C
authors.lastname: Barbero
authors.forename: A
authors.initials: A
authors.lastname: García-Orad
authors.forename: N
authors.initials: N
authors.lastname: Izaguirre
authors.forename: M
authors.initials: M
authors.lastname: Iriondo
authors.forename: C
authors.initials: C
authors.lastname: de la Rúa
mesh_terms: D001483:Base Sequence; D001842:Bone and Bones / Q000502:physiology*; D002874:Chromosome Mapping; D004247:DNA / Q000235:genetics; D005260:Female; D005838:Genotype; D006683:HLA-DQ Antigens / Q000235:genetics*; D059848:HLA-DQ alpha-Chains; D049691:History, Medieval; D006801:Humans; D018598:Minisatellite Repeats; D008969:Molecular Sequence Data; D010164:Paleopathology; D012091:Repetitive Sequences, Nucleic Acid
chemical_list: D006683:HLA-DQ Antigens; D059848:HLA-DQ alpha-Chains; C069050:HLA-DQA1 antigen; D004247:DNA