O-GLYCBASE: a revised database of O-glycosylated proteins.
O-GLYCBASE is a comprehensive database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the SWISS-PROT and PIR databases as well as directly from recently published reports. Nineteen percent of the entries extracted from the databases needed revision with respect to O-linked glycosylation. Entries include information about species, sequence, glycosylation site and glycan type, and are fully referenced. Sequence logos displaying the acceptor specificity for the GaINAc transferase are shown. A neural network method for prediction of mucin type O-glycosylation sites in mammalian glycoproteins exclusively from the primary sequence is made available by E-mail or WWW. The O-GLYCBASE database is also available electronically through our WWW server or by anonymous FTP.
Hansen
J E
JE
Laboratory for Infectious Diseases, University of Copenhagen, Denmark.
Lund
O
O
Nielsen
J O
JO
Hansen
J E
JE
Brunak
S
S
D000595:Amino Acid Sequence; D000818:Animals; D003195:Computer Communication Networks; D016208:Databases, Factual; D006023:Glycoproteins / Q000737:chemistry*; D008969:Molecular Sequence Data
D006023:Glycoproteins