title: Evidence for a slow tertiary relaxation in the reaction of tert-butyl isocyanide with horseradish peroxidase.
abstract: The kinetics of tert-butyl isocyanide binding to the heme protein horseradish peroxidase (HRP) at 22 degrees C was examined on all time scales, from minutes to picoseconds, in aqueous borate buffer at pH 9.08. Unlike myoglobin (Mb) or hemoglobin, HRP shows two bimolecular ligand binding processes. For comparison, binding of the same ligand with Mb was measured under identical conditions. Ligand entry into the protein from the solvent in a mixing experiment is extremely slow in HRP: the bimolecular association constant is 0.04 M-1 s-1, while in Mb it is 4 x 10(3) M-1 s-1. Surprisingly, in view of that difference, picosecond and nanosecond photolyses reveal that once the ligand has reached the iron(II) site there is no difference in cage return or escape from the protein. The rate for the fastest cage return (from the contact pair) is close to 6 x 10(10) s-1 in both proteins. The rates of escape from the contact pair to form a secondary protein-caged pair are also similar: for Mb, 10 x 10(10) s-1, and for HRP, 8.5 x 10(10) s-1. The rate of rebinding from the protein-separated cage is near 4 x 10(6) s-1 in both proteins, and the rate of escape from protein to solvent is close to 3.7 x 10(6) s-1 in both. The difference between the two proteins lies in the low-millisecond time domain. After flash photolysis of HRP, there is a concentration-dependent recombination not seen in mixing experiments. This bimolecular rate constant varies slightly for different HRP preparations, being 2.6 x 10(4) or 4.0 x 10(4) M-1 s-1 in two cases, both of which are much faster than is observed in mixing experiments, namely, 0.04 M-1 s-1. In Mb, photolysis and mixing experiments consistently give the same combination rate, which is somewhat slower than the faster part of the HRP recombination. Similar measurements for the smaller ligand methyl isocyanide revealed no anomalous behavior. The interpretation proposed involves tertiary relaxation after ligand escape, which is significant in blocking the return of the large t-BuNC, but has no apparent effect on smaller ligands. Thus, HRP-t-BuNC reveals in dramatic fashion a phenomenon merely hinted at in earlier work involving the T-state binding kinetics of hemoglobin.
authors.affiliation: Department of Chemistry, Indian Institute of Technology, New Delhi, India.
authors.forename: D
authors.initials: D
authors.lastname: Bandyopadhyay
authors.forename: K N
authors.initials: KN
authors.lastname: Walda
authors.forename: T M
authors.initials: TM
authors.lastname: Grogan
authors.forename: D
authors.initials: D
authors.lastname: Magde
authors.forename: T G
authors.initials: TG
authors.lastname: Traylor
authors.forename: V S
authors.initials: VS
authors.lastname: Sharma
mesh_terms: D006735:Horseradish Peroxidase / Q000378:metabolism*; D007700:Kinetics; D008024:Ligands; D008956:Models, Chemical; D015335:Molecular Probes; D009570:Nitriles / Q000378:metabolism*; D013053:Spectrophotometry / Q000379:methods
chemical_list: D008024:Ligands; D015335:Molecular Probes; D009570:Nitriles; C008462:methylisonitrile; C099535:tert-butyl isocyanide; D006735:Horseradish Peroxidase