title: Molecular epidemiology of an outbreak of hepatitis A in Italy.
abstract: The relationship of hepatitis A virus (HAV) isolates associated with an outbreak in Genoa, Italy, in 1993 was examined using direct sequencing of amplicons derived by antigen capture PCR (AC/PCR) from faecal samples of the infected persons. Forty samples recovered from 38 primary and two secondary cases were examined. The latter were household contacts of the primary cases. In addition, faecal material of 2 unrelated persons infected simultaneously with hepatitis A in Genoa were tested. The PCR products derived from the P1/P2 junction of the HAV genome were analysed. A 100% nucleotide identity was detected between the viral isolates originating from the primary as well as the secondary cases. The viral isolates recovered from the faecal samples of the two unrelated cases differed from the virus causing the outbreak as well as from each other. These results indicate that a single HAV strain caused the outbreak. The virus might have been transmitted by ingestion of contaminated food or water since all hepatitis A infected employees of the factory had eaten in the same canteen. Definitions of HAV genotypes are based on numerous genetic comparisons of different strains. The sequence comparison of the investigated isolates with published HAV sequences of the P1/P2 genome region revealed that the virus associated with the outbreak belongs to HAV subgenotype IA, whereas the strains recovered from the viral isolates of the unrelated cases belong to subgenotype IB.
authors.affiliation: Department of Virology and Epidemiology of Virus Diseases, University of Tübingen, Germany.
authors.forename: A
authors.initials: A
authors.lastname: Normann
authors.forename: M
authors.initials: M
authors.lastname: Pfisterer-Hunt
authors.forename: S
authors.initials: S
authors.lastname: Schade
authors.forename: J
authors.initials: J
authors.lastname: Graff
authors.forename: R L
authors.initials: RL
authors.lastname: Chaves
authors.forename: P
authors.initials: P
authors.lastname: Crovari
authors.forename: G
authors.initials: G
authors.lastname: Icardi
authors.forename: B
authors.initials: B
authors.lastname: Flehmig
mesh_terms: D000956:Antigens, Viral / Q000378:metabolism; D004196:Disease Outbreaks; D005243:Feces / Q000821:virology; D006506:Hepatitis A / Q000453:epidemiology* / Q000276:immunology / Q000821:virology; D035922:Hepatitis A Antibodies; D035921:Hepatitis A Antigens; D006508:Hepatitis Antibodies / Q000097:blood; D006507:Hepatovirus / Q000145:classification / Q000235:genetics* / Q000276:immunology / Q000302:isolation & purification; D006801:Humans; D007075:Immunoglobulin M / Q000097:blood; D007558:Italy; D010802:Phylogeny; D012367:RNA, Viral
chemical_list: D000956:Antigens, Viral; D035922:Hepatitis A Antibodies; D035921:Hepatitis A Antigens; D006508:Hepatitis Antibodies; D007075:Immunoglobulin M; D012367:RNA, Viral