title: Chip PCR. I. Surface passivation of microfabricated silicon-glass chips for PCR.
abstract: The microreaction volumes of PCR chips (a microfabricated silicon chip bonded to a piece of flat glass to form a PCR reaction chamber) create a relatively high surface to volume ratio that increases the significance of the surface chemistry in the polymerase chain reaction (PCR). We investigated several surface passivations in an attempt to identify 'PCR friendly' surfaces and used those surfaces to obtain amplifications comparable with those obtained in conventional PCR amplification systems using polyethylene tubes. Surface passivations by a silanization procedure followed by a coating of a selected protein or polynucleotide and the deposition of a nitride or oxide layer onto the silicon surface were investigated. Native silicon was found to be an inhibitor of PCR and amplification in an untreated PCR chip (i.e. native slicon) had a high failure rate. A silicon nitride (Si(3)N(4) reaction surface also resulted in consistent inhibition of PCR. Passivating the PCR chip using a silanizing agent followed by a polymer treatment resulted in good amplification. However, amplification yields were inconsistent and were not always comparable with PCR in a conventional tube. An oxidized silicon (SiO(2) surface gave consistent amplifications comparable with reactions performed in a conventional PCR tube.
authors.affiliation: Department of Pathology and Laboratory Medicine, School of Medicine, University of Pennsylvania, Philadelphia, 19104, USA.
authors.forename: M A
authors.initials: MA
authors.lastname: Shoffner
authors.forename: J
authors.initials: J
authors.lastname: Cheng
authors.forename: G E
authors.initials: GE
authors.lastname: Hvichia
authors.forename: L J
authors.initials: LJ
authors.lastname: Kricka
authors.forename: P
authors.initials: P
authors.lastname: Wilding
mesh_terms: D001483:Base Sequence; D005898:Glass; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction / Q000295:instrumentation* / Q000379:methods*; D011108:Polymers; D012825:Silicon; D017655:Silicon Compounds; D012822:Silicon Dioxide
chemical_list: D011108:Polymers; D017655:Silicon Compounds; D012822:Silicon Dioxide; C032734:silicon nitride; D012825:Silicon