title: A functionally defective allele of TAP1 results in loss of MHC class I antigen presentation in a human lung cancer.
abstract: Tumours express a variety of novel epitopes which represent potential immune targets, and thus clinically evident tumours are thought to have effectively avoided immune recognition and elimination. Transporters associated with antigen presentation (TAP) are thought to be responsible for conveying intracellular peptides into the endoplasmic reticulum for complex formation with class I MHC and subsequent recognition by cytotoxic T lymphocytes. In this study, we evaluated 79 human solid tumours and cell lines for genetic abnormalities in TAP1 that might have led to an acquired loss of antigen presenting ability. A novel sequence (R659Q) was discovered near the ATP binding site in a human small cell lung cancer (SCLC) cell line, H1436. This cell line is heterozygous for this allele, but only the R659Q allele is transcribed into RNA. Even though the R659Q protein is expressed, these cells act as if they were TAP deficient by peptide binding and antigen presentation studies, which are restored after transfection of a functional TAP1 allele. This is the first evidence for a naturally occuring protein structural defect resulting in defective peptide transport in a human solid tumour.
authors.affiliation: Harmon Center for Therapeutic Oncology Research, UT Southwestern Medical Center, Dallas 75235-8593, USA.
authors.forename: H L
authors.initials: HL
authors.lastname: Chen
authors.forename: D
authors.initials: D
authors.lastname: Gabrilovich
authors.forename: R
authors.initials: R
authors.lastname: Tampé
authors.forename: K R
authors.initials: KR
authors.lastname: Girgis
authors.forename: S
authors.initials: S
authors.lastname: Nadaf
authors.forename: D P
authors.initials: DP
authors.lastname: Carbone
mesh_terms: D000071181:ATP Binding Cassette Transporter, Subfamily B, Member 2; D018528:ATP-Binding Cassette Transporters / Q000235:genetics* / Q000378:metabolism; D000255:Adenosine Triphosphate / Q000378:metabolism; D000483:Alleles; D001483:Base Sequence; D001665:Binding Sites; D018288:Carcinoma, Small Cell / Q000235:genetics / Q000473:pathology / Q000821:virology; D003062:Codon; D006579:Heterozygote; D015395:Histocompatibility Antigens Class I / Q000096:biosynthesis / Q000187:drug effects / Q000235:genetics*; D006801:Humans; D007371:Interferon-gamma / Q000494:pharmacology; D008175:Lung Neoplasms / Q000235:genetics* / Q000473:pathology; D008969:Molecular Sequence Data; D009975:Orthomyxoviridae; D018807:Polymorphism, Single-Stranded Conformational; D013602:T-Lymphocytes, Cytotoxic / Q000276:immunology; D014407:Tumor Cells, Cultured
chemical_list: D000071181:ATP Binding Cassette Transporter, Subfamily B, Member 2; D018528:ATP-Binding Cassette Transporters; D003062:Codon; D015395:Histocompatibility Antigens Class I; C073119:TAP1 protein, human; D007371:Interferon-gamma; D000255:Adenosine Triphosphate