Solvent-mediated conformational transition in beta-alanine containing cyclic peptides. VIII.
In the present paper we describe the solution nmr structural analysis and restrained molecular dynamic simulation of the cyclic pentapeptide cyclo-(Pro-Phe-Phe-beta-Ala-beta-Ala). The conformational analysis carried out in CD3CN and dimethylsulfoxide (DMSO) solutions by nmr spectroscopy was based on interproton distances derived from rotating frame nuclear Overhauser effect spectroscopy spectra and homonuclear coupling constants. A restrained molecular dynamic simulation in vacuo was also performed to build refined molecular models. The molecule is present in both solvent systems as two slowly interconverting conformers, characterized by a cis-trans isomerism around the beta-Ala5-Pro1 peptide bond. In CD3CN solution, the conformer with a ci5 peptide bond is quite similar to that observed in the solid state, while the conformer containing all trans peptide bonds is characterized by an intramolecular hydrogen bond stabilizing a C10- and a C13-ring structure. In DMSO solution, the trans isomer is partly similar to that observed in CD3CN solution while the cis isomer is different from that observed in the solid state. The effect of the solvent in stabilizing different conformations was also investigated in DMSO-CD3CN solvent mixtures.
Lombardi
A
A
Centro Interdipartimentale di Ricerca su Peptidi Bioattivi, Università di Napoli Federico II, Italy.
Saviano
M
M
Nastri
F
F
Maglio
O
O
Mazzeo
M
M
Isernia
C
C
Paolillo
L
L
Pavone
V
V
D000595:Amino Acid Sequence; D008969:Molecular Sequence Data; D010456:Peptides, Cyclic / Q000737:chemistry*; D011487:Protein Conformation; D012997:Solvents; D015091:beta-Alanine / Q000032:analysis*
D010456:Peptides, Cyclic; D012997:Solvents; D015091:beta-Alanine