title: Genetic characterization and phylogeny of Sabiá virus, an emergent pathogen in Brazil.
abstract: Sabiá virus, one of five arenaviruses from South America known to cause hemorrhagic fever in humans, emerged in 1990 when it was isolated from a fatal case in Sao Paulo, Brazil. Subsequently, it has caused two laboratory-acquired infections. Its natural distribution and host are still unknown. Using viral RNA and multiple polymerase chain reaction products as templates, the nucleotide sequence of the small (S) RNA segment of Sabiá virus, which codes for the nucleocapsid (N) and glycoprotein precursor, was determined. This virus shares an ambisense genome in common with other arenaviruses, although it has a unique predicted three stem--loop structure in the S RNA intergenic region. Phylogenetic analysis of a portion of the N gene sequence confirmed that Sabiá virus is distinct from all other members of the Arenaviridae and shares a progenitor with Junin, Machupo, Tacaribe, and Guanarito viruses.
authors.affiliation: Institut Français de Recherche Scientifique pour le Développement en Coopération, ORSTOM, Paris, France.
authors.forename: J P
authors.initials: JP
authors.lastname: Gonzalez
authors.forename: M D
authors.initials: MD
authors.lastname: Bowen
authors.forename: S T
authors.initials: ST
authors.lastname: Nichol
authors.forename: R
authors.initials: R
authors.lastname: Rico-Hesse
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D006477:Arenaviruses, New World / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification; D001483:Base Sequence; D001938:Brazil; D002213:Capsid / Q000235:genetics; D002522:Chlorocebus aethiops; D004279:DNA, Viral; D006478:Hemorrhagic Fever, American / Q000821:virology*; D006801:Humans; D051379:Mice; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D010802:Phylogeny; D011498:Protein Precursors / Q000235:genetics; D012367:RNA, Viral; D017386:Sequence Homology, Amino Acid; D014709:Vero Cells; D014758:Viral Core Proteins / Q000235:genetics
chemical_list: D004279:DNA, Viral; D011498:Protein Precursors; D012367:RNA, Viral; D014758:Viral Core Proteins