title: GenomeInspector: basic software tools for analysis of spatial correlations between genomic structures within megabase sequences.
abstract: The speed of acquisition of genomic sequence data exceeds the evaluation of function of the sequences by a vast margin. Most software available for the prediction of individual features does not assess the correlation of different motifs (level 1 methods). Here, we present a second-level software package called GenomeInspector (GI) for further analysis of results obtained with level 1 methods. Our approach does not require any a priori knowledge about motif organization and was designed as a modular package with a graphical user interface. Three examples for GI application are presented.
authors.affiliation: Institut für Säugetiergenetik, GSF-Forschungszentrum für Umwelt und Gesundheit GmbH, Oberschleissheim.
authors.forename: K
authors.initials: K
authors.lastname: Quandt
authors.forename: K
authors.initials: K
authors.lastname: Grote
authors.forename: T
authors.initials: T
authors.lastname: Werner
mesh_terms: D016678:Genome; D017422:Sequence Analysis, DNA; D012984:Software