title: The Pem homeobox gene. Androgen-dependent and -independent promoters and tissue-specific alternative RNA splicing.
abstract: The Pem gene encodes an atypical homeodomain protein, distantly related to Prd/Pax family members, that we demonstrate is regulated in a complex transcriptional and post-transcriptional manner. We show that the rat Pem genomic structure includes three 5'-untranslated (5'-UT) exons and four coding exons, three of which encode the homeodomain. Several alternatively spliced transcripts were identified, including one that skips an internal coding exon, enabling this mRNA to express a novel form of the Pem protein. Other alternatively spliced mRNAs were characterized that possess different 5'-UT regions, including a muscle-specific transcript. The different 5'-UT termini present in Pem transcripts conferred different levels of translatability in vitro. Two promoters containing multiple transcription initiation sites were identified: a distal promoter (Pd) in the first 5'-UT exon and a proximal promoter (Pp) located in the "intron" upstream of the first coding exon. The Pd was active in placenta, ovary, tumor cell lines, and to a lesser extent in skeletal muscle. In contrast, transcripts from the Pp were only detectable in testis and epididymis and were only expressed in epididymis in the presence of testosterone. To our knowledge no transcription factors have previously been identified that exhibit androgen-dependent expression in the epididymis.
authors.affiliation: Department of Immunology, University of Texas, M.D. Anderson Cancer Center, Houston, Texas 77030, USA.
authors.forename: S
authors.initials: S
authors.lastname: Maiti
authors.forename: J
authors.initials: J
authors.lastname: Doskow
authors.forename: S
authors.initials: S
authors.lastname: Li
authors.forename: R P
authors.initials: RP
authors.lastname: Nhim
authors.forename: J S
authors.initials: JS
authors.lastname: Lindsey
authors.forename: M F
authors.initials: MF
authors.lastname: Wilkinson
mesh_terms: D017398:Alternative Splicing; D000818:Animals; D001483:Base Sequence; D002460:Cell Line; D015342:DNA Probes; D004268:DNA-Binding Proteins / Q000096:biosynthesis* / Q000235:genetics*; D004822:Epididymis / Q000378:metabolism; D005091:Exons; D005260:Female; D015870:Gene Expression / Q000187:drug effects*; D015723:Gene Library; D005801:Genes, Homeobox; D018398:Homeodomain Proteins; D007438:Introns; D008297:Male; D051379:Mice; D008969:Molecular Sequence Data; D009928:Organ Specificity; D010053:Ovary / Q000378:metabolism; D010920:Placenta / Q000378:metabolism; D011247:Pregnancy; D011401:Promoter Regions, Genetic; D014176:Protein Biosynthesis / Q000187:drug effects; D051381:Rats; D013737:Testis / Q000378:metabolism; D013739:Testosterone / Q000494:pharmacology*; D014157:Transcription Factors / Q000096:biosynthesis* / Q000235:genetics*; D014158:Transcription, Genetic
chemical_list: D015342:DNA Probes; D004268:DNA-Binding Proteins; D018398:Homeodomain Proteins; D013739:Testosterone; D014157:Transcription Factors; C490383:Rhox5 protein, rat; C498048:Rhox5 protein, mouse