title: A comparative analysis of prostate-specific antigen gene sequence in benign and malignant prostate tissue.
abstract: OBJECTIVE
  Different molecular forms of prostate-specific antigen (PSA) appear to be expressed by benign prostatic hyperplasia (BPH) compared with prostate cancer. These differences are not well understood and may arise from aberrant RNA splicing, altered protein glycosylation, or variant PSA complexing to macroglobulins. To our knowledge, a direct comparison of PSA mRNA sequences in BPH versus prostate cancer to account for these differences has not been reported. The purpose of this study was to compare the complete PSA mRNA gene sequences in benign and malignant prostate tissue to determine whether altered PSA phenotypes are a result of gene mutations and to compare the published PSA sequences.
  
  
  METHODS
  Total RNA was extracted from 17 prostate specimens from 8 patients, including matched benign and malignant prostate tissue in 6 patients. The samples were subjected to reverse transcriptase-polymerase chain reaction (RT-PCR) of the PSA coding sequence and part of the 3' untranslated region. Directed DNA sequencing was performed on these fragments.
  
  
  RESULTS
  The benign and malignant prostate tissue cDNA sequence data of both strands were aligned and a computer analysis revealed 100% match with no evidence of mutation in prostate cancer compared to normal tissue. Sequence analysis did not reveal point mutations or aberrant splicing in any of the samples, including the matched malignant and nonmalignant tissues. Comparison with published sequences revealed infrequent and inconsistent sequence differences.
  
  
  CONCLUSIONS
  These findings suggest that the PSA gene expressed in malignant prostate tissue is the wild type. PSA structural alterations previously reported in the literature may occur through post-transitional mechanisms. A detailed understanding of the possible differences in the PSA gene sequence is essential as we develop newer techniques that utilize RT-PCR to perform molecular diagnosis and staging of prostate cancer.
authors.affiliation: Department of Urology, Jefferson Cancer Center, Thomas Jefferson University, Philadelphia, PA 19107, USA.
authors.forename: R
authors.initials: R
authors.lastname: Baffa
authors.forename: J G
authors.initials: JG
authors.lastname: Moreno
authors.forename: M
authors.initials: M
authors.lastname: Monne
authors.forename: M L
authors.initials: ML
authors.lastname: Veronese
authors.forename: L G
authors.initials: LG
authors.lastname: Gomella
mesh_terms: D001483:Base Sequence; D018076:DNA, Complementary; D006801:Humans; D008297:Male; D008969:Molecular Sequence Data; D017430:Prostate-Specific Antigen / Q000235:genetics*; D011470:Prostatic Hyperplasia / Q000235:genetics*; D011471:Prostatic Neoplasms / Q000235:genetics*; D012333:RNA, Messenger / Q000235:genetics
chemical_list: D018076:DNA, Complementary; D012333:RNA, Messenger; D017430:Prostate-Specific Antigen