title: 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria.
abstract: Microorganisms play an important role in the biogeochemistry of the ocean surface layer, but spatial and temporal structures in the distributions of specific bacterioplankton species are largely unexplored, with the exceptions of those organisms that can be detected by either autofluorescence or culture methods. The use of rRNA genes as genetic markers provides a tool by which patterns in the growth, distribution, and activity of abundant bacterioplankton species can be studied regardless of the ease with which they can be cultured. Here we report an unusual cluster of related 16S rRNA genes (SAR202, SAR263, SAR279, SAR287, SAR293, SAR307) cloned from seawater collected at 250 m in the Sargasso Sea in August 1991, when the water column was highly stratified and the deep chlorophyll maximum was located at a depth of 120 m. Phylogenetic analysis and an unusual 15-bp deletion confirmed that the genes were related to the Green Non-Sulfur phylum of the domain Bacteria. This is the first evidence that representatives of this phylum occur in the open ocean. Oligonucleotide probes were used to examine the distribution of the SAR202 gene cluster in vertical profiles (0-250 m) from the Atlantic and Pacific Oceans, and in discrete (monthly) time series (O and 200 m) (over 30 consecutive months in the Western Sargasso Sea. The data provide robust statistical support for the conclusion that the SAR202 gene cluster is proportionately most abundant at the lower boundary of the deep chlorophyll maximum (P = 2.33 x 10(-5)). These results suggest that previously unsuspected stratification of microbial populations may be a significant factor in the ecology of the ocean surface layer.
authors: Department of Microbiology, Oregon State University, Corvallis 97331, USA.
authors: S J
authors: SJ
authors: Giovannoni
authors: M S
authors: MS
authors: Rappé
authors: K L
authors: KL
authors: Vergin
authors: N L
authors: NL
authors: Adair
mesh_terms: D000818:Animals; D001267:Atlantic Ocean; D001419:Bacteria / Q000145:classification / Q000235:genetics*; D001483:Base Sequence; D002734:Chlorophyll; D005798:Genes, Bacterial; D008961:Models, Structural; D008969:Molecular Sequence Data; D005810:Multigene Family; D009690:Nucleic Acid Conformation; D015345:Oligonucleotide Probes; D010140:Pacific Ocean; D010802:Phylogeny; D010933:Plankton / Q000145:classification / Q000235:genetics*; D012336:RNA, Ribosomal, 16S / Q000737:chemistry / Q000235:genetics*; D012623:Seawater / Q000382:microbiology
chemical_list: D015345:Oligonucleotide Probes; D012336:RNA, Ribosomal, 16S; D002734:Chlorophyll