The human keratinocyte two-dimensional gel protein database (update 1995): mapping components of signal transduction pathways.
The master two-dimensional (2-D) gel database of human keratinocytes currently lists 3154 cellular proteins (2224 isoelectric focusing, IEF; and 930 nonequilibrium pH gradient electrophoresis, NEPHGE), many of which correspond to post-translational modifications. 1082 polypeptides have been identified (protein name, organelle components, etc.) using a procedure or a combination of procedures that include (i) comigration with known human proteins, (ii) 2-D gel immunoblotting using specific antibodies, (iii) microsequencing of Coomassie Brilliant Blue stained proteins, (iv) mass spectrometry, (v)vaccinia virus expression of full length cDNAs, and (vi) in vitro transcription/translation of full-length cDNAs. This year, special emphasis has been given to the identification of signal transduction components by using 2-D gel immunoblotting of crude keratinocyte lysates in combination with enhanced chemoluminescence (ECL) detection. Identified proteins are listed both in alphabetical order and with increasing SSP number, together with their M(r), pI, cellular localization and credit to the investigator(s) that aided in the identification. Ultimately, the aim of the comprehensive database is to gather--through a systematic study of ekeratinocytes--qualitative and quantitative information on proteins and their genes that may allow us to identify abnormal patterns of gene expression and to pinpoint signaling pathways and components affected in various skin diseases, cancer included.
Celis
J E
JE
Department of Medical Biochemistry, Aarhus University, Denmark.
Rasmussen
H H
HH
Gromov
P
P
Olsen
E
E
Madsen
P
P
Leffers
H
H
Honoré
B
B
Dejgaard
K
K
Vorum
H
H
Kristensen
D B
DB
D002478:Cells, Cultured; D005591:Chemical Fractionation; D016208:Databases, Factual; D015180:Electrophoresis, Gel, Two-Dimensional; D000078404:Epidermal Cells; D006801:Humans; D015603:Keratinocytes / Q000737:chemistry* / Q000166:cytology / Q000378:metabolism; D011506:Proteins / Q000032:analysis*; D015398:Signal Transduction
D011506:Proteins