Database and software for the analysis of mutations at the lacZ locus in transgenic rodents.
The use of transgenic rodents is becoming increasingly widespread in genetic toxicology. In an effort to centralize and standardize the information regarding mutations in rodents bearing the lacZ transgene, we have created a computerized database that contains published information about DNA sequence alterations on over 100 mutants. Information on the literature citation, mutagenic conditions, organs from specific animals, mutation frequency in each organ, specific mutation, amino acid change, and other data are provided for each mutant. We have also produced a software package for the analysis of the lacZ database. Routines have been developed for the analysis of single base substitutions, including programs to 1) determine whether two mutational spectra are statistically different, 2) determine whether mutations show a DNA strand bias, 3) determine the frequency of transitions and transversions, 4) display the number and kind of mutations observed at each base in the coding region, 5) perform nearest-neighbor analysis, and 6) display mutable amino acids in the lacZ protein. The software runs only on IBM-compatible machines running Microsoft Windows. The software and lacZ database are freely available via the Internet (http:@sunsite.unc.edu/dnam/mainpage.ht ml). These programs simplify the analysis of the rapidly increasing information about lacZ mutation. The programs permit the facile comparison between different lacZ data sets as well as the identification of mutational patterns that may be of importance to experimenters studying the mechanisms of mutation and mutational spectra in transgenic animals.
Cariello
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NF
Glaxo Wellcome Inc., Research Triangle Park, North Carolina 27709, USA.
Douglas
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GR
D000596:Amino Acids / Q000235:genetics; D000818:Animals; D003628:Database Management Systems; D016208:Databases, Factual; D007763:Lac Operon; D051379:Mice; D008822:Mice, Transgenic / Q000235:genetics*; D009154:Mutation; D012984:Software; D012985:Software Design
D000596:Amino Acids