Covalent structure of the flavoprotein subunit of the flavocytochrome c: sulfide dehydrogenase from the purple phototrophic bacterium Chromatium vinosum.
The amino acid sequence of the flavoprotein subunit of Chromatium vinosum flavocytochrome c-sulfide dehydrogenase (FCSD) was determined by automated Edman degradation and mass spectrometry in conjunction with the three-dimensional structure determination (Chen Z et al., 1994, Science 266:430-432). The sequence of the diheme cytochrome c subunit was determined previously. The flavoprotein contains 401 residues and has a calculated protein mass, including FAD, of 43,568 Da, compared with a mass of 43,652 +/- 44 Da measured by LDMS. There are six cysteine residues, among which Cys 42 provides the site of covalent attachment of the FAD. Cys 161 and Cys 337 form a disulfide bond adjacent to the FAD. The flavoprotein subunit of FCSD is most closely related to glutathione reductase (GR) in three-dimensional structure and, like that protein, contains three domains. However, approximately 20 insertions and deletions are necessary for alignment and the overall identity in sequence is not significantly greater than for random comparisons. The first domain binds FAD in both proteins. Domain 2 of GR is the site of NADP binding, but has an unknown role in FCSD. We postulate that it is the binding site for a cofactor involved in oxidation of reduced sulfur compounds. Domains 1 and 2 of FCSD, as of GR, are homologous to one another and represent an ancient gene doubling. The third domain provides the dimerization interface for GR, but is the site of binding of the cytochrome subunit in FCSD. The four functional entities, predicted to be near the FAD from earlier studies of the kinetics of sulfite adduct formation and decay, have now been identified from the three-dimensional structure and the sequence as Cys 161/Cys 337 disulfide, Trp 391, Glu 167, and the positive end of a helix dipole.
Van Driessche
G
G
Department of Biochemistry, Physiology and Microbiology, Laboratory of Protein Biochemistry and Protein Engineering, State University of Gent, Belgium.
Koh
M
M
Chen
Z W
ZW
Mathews
F S
FS
Meyer
T E
TE
Bartsch
R G
RG
Cusanovich
M A
MA
Van Beeumen
J J
JJ
D000595:Amino Acid Sequence; D001665:Binding Sites; D002844:Chromatium / Q000737:chemistry*; D003574:Cytochrome c Group / Q000737:chemistry*; D019281:Dimerization; D005182:Flavin-Adenine Dinucleotide / Q000378:metabolism; D005980:Glutathione Reductase / Q000737:chemistry; D006801:Humans; D013058:Mass Spectrometry; D008666:Metalloendopeptidases / Q000378:metabolism; D008958:Models, Molecular; D008969:Molecular Sequence Data; D015394:Molecular Structure; D010088:Oxidoreductases / Q000737:chemistry*; D010446:Peptide Fragments / Q000737:chemistry; D016415:Sequence Alignment; D017421:Sequence Analysis
D003574:Cytochrome c Group; D010446:Peptide Fragments; D005182:Flavin-Adenine Dinucleotide; D010088:Oxidoreductases; D005980:Glutathione Reductase; C064500:flavocytochrome c sulfide dehydrogenase; D008666:Metalloendopeptidases; C039830:peptidyl-Lys metalloendopeptidase