title: RNase E can inhibit the decay of some degradation intermediates: degradation of Desulfovibrio vulgaris cytochrome c3 mRNA in E coli.
abstract: In Escherichia coli, ribonuclease E (RNase E) is a key endonuclease in mRNA decay. We have analysed the role of E coli RNase E on the degradation of a heterologous cytochrome c3 (cyc) mRNA from Desulfovibrio vulgaris Hildenborough. The decay of the cyc transcript in wild-type and mutant E coli cells was followed and the degradation intermediates analysed by Northern blotting and S1 protection analysis. The half-life of total cyc mRNA intermediates was increased in the RNase E mutant. A number of degradation intermediates were stabilised, and new species arose. However, some species decayed faster in the met5 mutant at the non-permissive temperature, suggesting that RNase E might inhibit their degradation. The results indicate that RNase E is involved in cyc mRNA degradation, and, interestingly, decay of certain intermediates could be reduced by this enzyme activity. This may suggest a functional interaction between RNase E and exonucleases, like polynucleotide phosphorylase.
authors.affiliation: Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Oeiras, Portugal.
authors.forename: A A
authors.initials: AA
authors.lastname: Cruz
authors.forename: P E
authors.initials: PE
authors.lastname: Marujo
authors.forename: S F
authors.initials: SF
authors.lastname: Newbury
authors.forename: C M
authors.initials: CM
authors.lastname: Arraiano
mesh_terms: D015152:Blotting, Northern; D003574:Cytochrome c Group / Q000235:genetics*; D016969:Desulfovibrio vulgaris / Q000201:enzymology*; D004722:Endoribonucleases / Q000378:metabolism*; D004926:Escherichia coli / Q000378:metabolism*; D006207:Half-Life; D006868:Hydrolysis; D012329:RNA, Bacterial / Q000235:genetics / Q000378:metabolism; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism*; D011994:Recombinant Proteins / Q000235:genetics
chemical_list: D003574:Cytochrome c Group; D012329:RNA, Bacterial; D012333:RNA, Messenger; D011994:Recombinant Proteins; C017165:cytochrome c(3); D004722:Endoribonucleases; C022537:ribonuclease E