Strategy for distinguishing a new DQB1 allele (DQB1*0611) from the closely related DQB1*0602 allele via sequence specific PCR or direct DNA sequencing.
A novel DQ6 allele (DQB1*0611) was identified via direct DNA sequencing in an African-American donor for bone marrow transplantation. The allele was not suspected on the basis of a sequence specific PCR assay which instead indicated the presence of DQB1*0602. DQB1*0602 and DQB1*0611 differ in exon 2 only at codon 9 resulting in a tyrosine substitution for phenylalanine. A modification of current DQB1 sequence specific PCR assays was devised which allows distinction between the closely related DQB1*0602 and DQB1*0611 alleles. Preliminary allele frequency studies suggest that DQB1*0611 is rare both in a non-African American sample and in American of African descent carrying DR11, DQ6 haplotypes. The selection of various DQB1*0611 detection methods is discussed.
Williams
T M
TM
University of New Mexico, Department of Pathology, Albuquerque, USA. Tom-Williams@somasf.unm.edu
Bassinger
S
S
Moehlenkamp
C
C
Wu
J
J
Montoya
G D
GD
Griffith
B B
BB
McAuley
J D
JD
Goldman
S
S
Maurer
D H
DH
Troup
G M
GM
D000483:Alleles; D001483:Base Sequence; D003937:Diagnosis, Differential; D006683:HLA-DQ Antigens / Q000235:genetics* / Q000302:isolation & purification*; D059866:HLA-DQ beta-Chains; D006801:Humans; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction; D018807:Polymorphism, Single-Stranded Conformational
D006683:HLA-DQ Antigens; D059866:HLA-DQ beta-Chains; C069051:HLA-DQB1 antigen