[Secondary structure and conformational heterogeneity of Naja naja oxiana cytotoxin II].
The proton resonances of cytotoxin II from Naja naja oxiana were sequentially assigned in 2D 1H NMR spectra for all of its 60 amino acid residues of both major and minor components of the spectra. The presence of the minor component was shown to be due to a conformational heterogeneity of the cytotoxin. The proton-deuterium exchange rates of amide groups were measured in 2H2O at a pH of 5.0 and at 10 degrees C. Experimental data obtained (d-connectivities, H-NC alpha-H coupling constants and long-range NOEs) allowed for the determination of the secondary structure of the two cytotoxin conformers. Both conformer structures contain two antiparallel beta-sheets. The first beta-sheet involves two antiparallel beta-strands comprising the residues 2-5 and 10-13. The second sheet involves three antiparallel strands consisting of the residues 20-26, 35-39, and 49-55; its peripheral beta-strands are connected by cross-over. The most striking structural difference between these conformers is the nature of the beta-turn 6-9, which has trans- and cis-forms of the Val7-Pro8 peptide bond in the major and minor conformer, respectively. The structures of other beta-turns, some of which are ascribed to standard types, and the C-termini are almost the same for the both conformers.
Dement'eva
D V
DV
Utkin
Iu N
IuN
Arsen'ev
A S
AS
D000595:Amino Acid Sequence; D003039:Cobra Neurotoxin Proteins / Q000737:chemistry*; D006863:Hydrogen-Ion Concentration; D009682:Magnetic Resonance Spectroscopy; D013058:Mass Spectrometry; D008969:Molecular Sequence Data; D017433:Protein Structure, Secondary; D011522:Protons
D003039:Cobra Neurotoxin Proteins; D011522:Protons; C076649:neurotoxin II, Naja naja oxiana