title: [Rapid identification of chromosomes by in situ hybridization of labelled oligonucleotides and comparison with the PRINS method].
abstract: We propose a simple, fast and inexpensive method of identification of human centromeres on metaphasic chromosomes and interphasic nuclei. This is based on in situ hybridization of labelled oligonucleotides. The efficiency of the methodology was demonstrated on cytogenetic preparations from human heteroploid and human x hamster hybrid cell lines and also on frozen tissue sections using an oligonucleotide specific for the alpha-satellite DNA of chromosome 1. Three versions of this oligonucleotide respectively labelled with 1, 4 and 10 fluorescein molecules were synthesized. The signal intensity provided by the oligonucleotide coupled with 4 fluoresceins allowed unambiguously the detection of the chromosome and the establishment of its ploidy using a classical cytogenetic microscope without the need for an amplification procedure. The use of different fluorochromes and possibly combination with an unlabelled elongation in 3' of the oligonucleotides which stabilize its hybridization, lead to a simple multicolour method. Preliminary quantification of the signals obtained by in situ hybridization of labelled oligonucleotides and comparison with those obtained by primed in situ labelling (PRINS) using the same nucleotides as primers, suggest that the elongation generated by PRINS may be very short compared with a PCR in solution. This limited efficiency of the in situ elongation may reflect the present difficulties of PRINS and DISC PCR (direct in situ single copy polymerase chain reaction) with primers specific for non-repetitive sequencies.
authors.affiliation: INSERM U. 178, 16, Villejuif, France.
authors.forename: P
authors.initials: P
authors.lastname: Coullin
authors.forename: A
authors.initials: A
authors.lastname: Valent
authors.forename: I
authors.initials: I
authors.lastname: Barbounaki
authors.forename: J J
authors.initials: JJ
authors.lastname: Candelier
authors.forename: F
authors.initials: F
authors.lastname: Pellestor
authors.forename: A
authors.initials: A
authors.lastname: Bernheim
mesh_terms: D000818:Animals; D002503:Centromere / Q000235:genetics*; D002874:Chromosome Mapping; D002878:Chromosomes, Human, Pair 1; D006224:Cricetinae; D006801:Humans; D017404:In Situ Hybridization, Fluorescence; D066298:In Vitro Techniques; D015345:Oligonucleotide Probes; D009841:Oligonucleotides
chemical_list: D015345:Oligonucleotide Probes; D009841:Oligonucleotides
vernacular_title: Identification rapide des chromosomes par hybridation in situ d'oligonucléotides marqués et comparaison avec la méthode PRINS.