title: Development of an in vitro mRNA decay system for Escherichia coli: poly(A) polymerase I is necessary to trigger degradation.
abstract: Using a novel Escherichia coli in vitro decay system in which polysomes are the source of both enzymes and mRNA, we demonstrate a requirement for poly(A) polymerase I (PAP I) in mRNA turnover. The in vitro decay of two different mRNAs (trxA and lpp) is triggered by the addition of ATP only when polysomes are prepared from s strain carrying the wild-type gene for PAP I (pcnB+). The relative decay rates of these two messages are similar in vitro and in vivo. Poly(A) tails are formed on both mRNAs, but no poly(A) are detected on the 3' end of mature 23S rRNA. The size distribution of poly(A) tails generated in vitro, averaging 50 nt in length, is comparable to that previously reported in vivo. PAP I activity is associated exclusively with the polysomes. Exogenously added PAP I does not restore mRNA decay to PAP I-polysomes, suggesting that, in vivo, PAP I may be part of a multiprotein complex. The potential of this in vitro system for analyzing mRNA decay in E. coli is discussed.
authors.affiliation: Department of Genetics, University of Georgia, Athens 30602-7223, USA.
authors.forename: C A
authors.initials: CA
authors.lastname: Ingle
authors.forename: S R
authors.initials: SR
authors.lastname: Kushner
mesh_terms: D000249:Adenosine Monophosphate / Q000378:metabolism; D001425:Bacterial Outer Membrane Proteins / Q000096:biosynthesis; D002352:Carrier Proteins; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism*; D029968:Escherichia coli Proteins; D005798:Genes, Bacterial; D007700:Kinetics; D008074:Lipoproteins; D011061:Poly A / Q000032:analysis; D011062:Polynucleotide Adenylyltransferase / Q000378:metabolism*; D011132:Polyribosomes / Q000378:metabolism*; D012329:RNA, Bacterial / Q000737:chemistry / Q000378:metabolism; D012333:RNA, Messenger / Q000096:biosynthesis / Q000737:chemistry / Q000378:metabolism*; D016914:Ribonuclease H; D014158:Transcription, Genetic
chemical_list: D001425:Bacterial Outer Membrane Proteins; D002352:Carrier Proteins; D029968:Escherichia coli Proteins; D008074:Lipoproteins; C099932:Lpp protein, E coli; D012329:RNA, Bacterial; D012333:RNA, Messenger; D011061:Poly A; D000249:Adenosine Monophosphate; D011062:Polynucleotide Adenylyltransferase; D016914:Ribonuclease H