title: Results of culture form colonoscopically obtained specimens for bacteria and fungi in HIV-infected patients with diarrhea.
abstract: BACKGROUND
  The aim of our study was to determine the diagnostic yield of culture for bacteria and fungi from colonic biopsy specimens in 290 consecutive HIV-infected patients with diarrhea.
  
  
  METHODS
  During each colonoscopy, three biopsy specimens were homogenized and cultured on media for Salmonella and Shigella and for Campylobacter and Yersinia, on Loewenstein medium and on Sabouraud medium.
  
  
  RESULTS
  Cultures were found positive for one (n = 32) or two (n = 5) infectious agents in 37 cases, i.e., in 12.8% of the patients. Bacteria were isolated in 24 cases, and identified as Campylobacter jejunl-coli (n = 14), Salmonella (n = 2), Shigella (n = 1), or Pseudomonas aeruginosa (n = 7). Among the 14 patients with C. jejuni-coli intestinal infection, 11 had normal-appearing mucosa at colonoscopy, and 3 had a concomitant stool culture negative for Campylobacter. Mycobacterial cultures were positive for Mycobacterium avium intracellulare in 6 patients, who were already known as having a disseminated M. avium intracellulare infection from positive blood cultures. Fungal cultures were positive for Candida in 10 cases, without clear clinical significance.
  
  
  CONCLUSIONS
  The overall yield of culture for bacterial pathogens from colonic tissue in HIV-infected patients with diarrhea is low, but some individual cases of C. jejuni-coli infections may be detected from colonic tissue culture and not diagnosed by concomitant stool culture.
authors.affiliation: Department of Gastroenterology, Hôpital Rothschild, Paris, France.
authors.forename: L
authors.initials: L
authors.lastname: Beaugerie
authors.forename: B
authors.initials: B
authors.lastname: Salauze
authors.forename: A
authors.initials: A
authors.lastname: Buré
authors.forename: A M
authors.initials: AM
authors.lastname: Deluol
authors.forename: N
authors.initials: N
authors.lastname: Hoyeau-Idrissi
authors.forename: F
authors.initials: F
authors.lastname: Carbonnel
authors.forename: Y
authors.initials: Y
authors.lastname: Ngô
authors.forename: J
authors.initials: J
authors.lastname: Cosnes
authors.forename: W
authors.initials: W
authors.lastname: Rozenbaum
authors.forename: J C
authors.initials: JC
authors.lastname: Nicolas
authors.forename: J P
authors.initials: JP
authors.lastname: Gendre
mesh_terms: D017088:AIDS-Related Opportunistic Infections / Q000175:diagnosis*; D000328:Adult; D001424:Bacterial Infections / Q000175:diagnosis*; D002177:Candidiasis / Q000175:diagnosis*; D003106:Colon / Q000382:microbiology*; D003113:Colonoscopy; D015169:Colony Count, Microbial; D005260:Female; D019053:HIV Enteropathy / Q000175:diagnosis / Q000382:microbiology*; D006801:Humans; D008297:Male; D012812:Sigmoidoscopy; D013048:Specimen Handling