title: Automated assessment of numerical chromosomal aberrations in paraffin embedded prostate tumor cells stained by in situ hybridization.
abstract: We investigated the feasibility of automated counting of in situ hybridization signals (ISH) in interphase cells isolated from paraffin embedded prostate tissue. In total, 34 specimens from 7 patients with prostate cancer were stained with probes specific for the centromeric regions of chromosomes Y, 1, 7, 8, 10, and 15, using an immunoperoxidase based technique suitable for bright-field microscopy. Enumeration of the number of ISH spots of 500 nuclei per specimen was performed (1) using an automatic system developed without any human intervention and (2) using the same system, but including verification of the counts based on visual inspection of the stored images. As reference from each specimen, 200 cell nuclei were evaluated manually, using conventional microscopy. A typical analysis procedure (including user verification) took 35 min. The difference (root mean error) between the automated counting and the counting after visual interaction was relatively small (15%). The percentage of cells with incorrect counts by automated analysis was 20.2%, a number that could easily be improved by user interaction. Detection of cells with aneusomy proved to be more sensitive compared to the routine manual counting, in cases where aberrant frequencies were low. Automated counting of samples with low frequencies (< 10%) resulted in a higher frequency of aberrant cells in 9 of 11 cases, probably due to the fact that an unbiased cell selection is guaranteed. Automated assessment of ISH signals is considered useful for the evaluation of chromosomal aberrations in prostate tumor cells, provided that the counts are visually confirmed.
authors.affiliation: Department of Cytochemistry and Cytometry, Leiden University, The Netherlands. mesker@rullf2.leidenuniv.nl
authors.forename: W E
authors.initials: WE
authors.lastname: Mesker
authors.forename: J C
authors.initials: JC
authors.lastname: Alers
authors.forename: W C
authors.initials: WC
authors.lastname: Sloos
authors.forename: H
authors.initials: H
authors.lastname: Vrolijk
authors.forename: A K
authors.initials: AK
authors.lastname: Raap
authors.forename: H V
authors.initials: HV
authors.lastname: Dekken
authors.forename: H J
authors.initials: HJ
authors.lastname: Tanke
mesh_terms: D000368:Aged; D002869:Chromosome Aberrations; D001330:Electronic Data Processing; D006801:Humans; D017403:In Situ Hybridization / Q000379:methods*; D008297:Male; D008875:Middle Aged; D016612:Paraffin Embedding; D011471:Prostatic Neoplasms / Q000235:genetics* / Q000473:pathology; D013194:Staining and Labeling; D013997:Time Factors