title: Substituted glycals as probes of glycosidase mechanisms.
abstract: D-Glucal and a series of substituted derivatives have been tested as substrates, inhibitors and inactivators of the Agrobacterium faecalis beta-glucosidase in order to probe structure/function relationships in this enzyme. D-Glucal is shown to be a substrate (kcat = 2.3 min-1, Km = 0.85 mM) undergoing hydration with stereospecific protonation from the alpha-face to yield 2-deoxy-beta-D-glucose. 1-Methyl-D-glucal surprisingly serves as only a poor substrate (kcat = 0.056 min-1, Km = 57 mM), also undergoing protonation from the alpha-face. 2-Fluoro-D-glucal, however is completely inert, as a result of inductive destabilisation of the oxocarbenium ion-like transition state for protonation, and functions only as a relatively weak (Ki = 24 mM) inhibitor. Similar behaviour was seen with almond beta-glucosidase and yeast alpha-glucosidase and for the interaction of 2-fluoro-D-galactal with Escherichia coli beta-galactosidase. A series of of alpha, beta-unsaturated glucal derivatives was also synthesised and tested as potential substrates, inhibitors or inactivators of A. faecalis beta-glucosidase. Of these only 1-nitro-D-glucal functioned as a time dependent, irreversible inactivator (ki = 0.011 min-1, Ki = 5.5 mM), presumably acting as a Michael acceptor. Electrospray mass spectrometric analysis revealed multiple labeling of the enzyme by this inactivator, lessening its usefulness as an affinity label. Less reactive Michael acceptor glycals which might have been more specific (1-cyano-, 2-cyano-, 1-carboxylic acid, 1-carboxylic acid methyl ester) unfortunately did not function as inactivators or substrates, only as relatively weak reversible inhibitors (Ki = 3-96 mM).
authors.affiliation: Department of Chemistry, University of British Columbia, Vancouver, Canada.
authors.forename: E C
authors.initials: EC
authors.lastname: Lai
authors.forename: S A
authors.initials: SA
authors.lastname: Morris
authors.forename: I P
authors.initials: IP
authors.lastname: Street
authors.forename: S G
authors.initials: SG
authors.lastname: Withers
mesh_terms: D002125:Calcium Gluconate / Q000031:analogs & derivatives / Q000737:chemistry* / Q000378:metabolism; D006026:Glycoside Hydrolases / Q000737:chemistry*; D007700:Kinetics; D009682:Magnetic Resonance Spectroscopy; D015335:Molecular Probes; D013055:Spectrophotometry, Infrared; D013379:Substrate Specificity; D001617:beta-Glucosidase / Q000378:metabolism
chemical_list: D015335:Molecular Probes; D006026:Glycoside Hydrolases; D001617:beta-Glucosidase; D002125:Calcium Gluconate