title: The nucleotide sequence and predicted secondary structure of small subunit (18S) ribosomal RNA from Spirometra erinaceieuropaei.
abstract: The nucleotide (nt) sequence of a small subunit (18S) ribosomal RNA gene from the plerocercoid of Spirometra erinaceieuropaei (SEP) was determined. The gene with 2182 bp in length is larger than that of most eukaryotes. Extra nt sequences occur in regions known to be variable (V4 and V7). The predicted secondary structure of the nt positions 679-933 (V4) revealed different helices from that of other eukaryotes. The region between nt positions 1540 and 1749 (V7) was different from that of other eukaryotes, but the secondary structure prediction by computer analysis demonstrated that this part of 18S rRNA sequence from S. erinaceieuropaei may form a single extended helix. Nt that were aligned with those of nine other parasites were used to estimate phylogenetic relationships. The data presented here clearly indicate that S. erinaceieuropaei is closely related to Echinococcus granulosus.
authors.affiliation: Department of Parasitology, Shinshu University School of Medicine, Nagano Prefecture, Japan.
authors.forename: D W
authors.initials: DW
authors.lastname: Liu
authors.forename: H
authors.initials: H
authors.lastname: Kato
authors.forename: K
authors.initials: K
authors.lastname: Sugane
mesh_terms: D000818:Animals; D001483:Base Sequence; D005075:Biological Evolution; D017238:Genes, Helminth; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D010802:Phylogeny; D018510:RNA, Helminth / Q000737:chemistry / Q000235:genetics*; D012337:RNA, Ribosomal, 18S / Q000737:chemistry / Q000235:genetics*; D016415:Sequence Alignment; D013146:Spirometra / Q000145:classification / Q000235:genetics*
chemical_list: D018510:RNA, Helminth; D012337:RNA, Ribosomal, 18S