title: Arbitrary primed PCR fingerprinting and serotyping of clinical Pseudomonas aeruginosa strains.
abstract: Arbitrary primed PCR (AP-PCR) analysis was compared with serotyping as a means of high-resolution typing of Pseudomonas aeruginosa. Seventy-four isolates from 3 different hospitals and 18 reference strains were studied. Serotyping provided good index of discrimination, although eleven isolates could not be serotyped. Genomic DNA was amplified with a single 10 nucleotide primer (sequence 5'-AGG GGT CTT G-3'). The strains were genetically diverse and 61 different AP-PCR profiles of 2-7 bands between 0.3 and 2.4 kb were obtained. AP-PCR profiles were not consistently associated with serotypes, but they clearly subtyped strains of the same serotype. Numerical analysis of AP-PCR patterns defined 7 groups at the 55% similarity level, and identified predominant strains in each hospital. The results show that AP-PCR analysis provides a simple and practical approach to typing P. aeruginosa that is more discriminatory than traditional serotyping scheme. We suggest that maximum discrimination can be achieved by a combination of both methods.
authors.affiliation: Departamento de Biotecnología, Universidad Politécnica, Valencia, Spain. jhernand@upvnet.upv.es
authors.forename: J
authors.initials: J
authors.lastname: Hernández
authors.forename: M A
authors.initials: MA
authors.lastname: Ferrus
authors.forename: M
authors.initials: M
authors.lastname: Hernández
authors.forename: R J
authors.initials: RJ
authors.lastname: Owen
mesh_terms: D003428:Cross Infection / Q000453:epidemiology / Q000382:microbiology; D016172:DNA Fingerprinting; D004269:DNA, Bacterial / Q000032:analysis; D006801:Humans; D016133:Polymerase Chain Reaction / Q000379:methods*; D011552:Pseudomonas Infections / Q000453:epidemiology / Q000382:microbiology; D011550:Pseudomonas aeruginosa / Q000145:classification* / Q000235:genetics / Q000254:growth & development / Q000302:isolation & purification; D019105:Random Amplified Polymorphic DNA Technique; D015203:Reproducibility of Results; D012703:Serotyping
chemical_list: D004269:DNA, Bacterial