title: Detection system for Escherichia coli-specific virulence genes: absence of virulence determinants in B and C strains.
abstract: We describe a rational approach to simultaneously test Escherichia coli strains for the presence of known virulence genes in a reverse dot blot procedure. Specific segments of virulence genes of E. coli designed to have similar hybridization parameters were subcloned on plasmids and subsequently amplified by PCR as unlabeled probes in amounts sufficient to be bound to nylon membranes. Various pathogenic isolates and laboratory strains of E. coli were probed for the presence of virulence genes by labeling the genomic DNA of these strains with digoxigenin and then hybridizing them to the prepared nylon membranes. These hybridization results demonstrated that besides the E. coli K-12 safety strain derivatives, E. coli B and C strains are also devoid of genes encoding any of the investigated virulence factors. In contrast, pathogenic E. coli control strains, used to evaluate the method, showed typical hybridization patterns. The described probes and their easy application on a single filter were shown to provide a useful tool for the safety assessment of E. coli strains to be used as hosts in biotechnological processes. This approach might also be used for the identification and characterization of clinically significant E. coli isolates from human and animal species.
authors.affiliation: Institute of Veterinary Bacteriology, University of Bern, Switzerland. Kuhnert@vbi.unibe.ch
authors.forename: P
authors.initials: P
authors.lastname: Kuhnert
authors.forename: J
authors.initials: J
authors.lastname: Hacker
authors.forename: I
authors.initials: I
authors.lastname: Mühldorfer
authors.forename: A P
authors.initials: AP
authors.lastname: Burnens
authors.forename: J
authors.initials: J
authors.lastname: Nicolet
authors.forename: J
authors.initials: J
authors.lastname: Frey
mesh_terms: D015373:Bacterial Typing Techniques; D003001:Cloning, Molecular; D017931:DNA Primers; D004926:Escherichia coli / Q000145:classification / Q000235:genetics* / Q000472:pathogenicity*; D005798:Genes, Bacterial; D009693:Nucleic Acid Hybridization; D015345:Oligonucleotide Probes; D016133:Polymerase Chain Reaction; D017422:Sequence Analysis, DNA; D014774:Virulence / Q000235:genetics
chemical_list: D017931:DNA Primers; D015345:Oligonucleotide Probes