title: The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes.
abstract: The Genome Sequence DataBase (GSDB) has completed its conversion to an improved relational database. The new database, GSDB 1.0, is fully operational and publicly available. Data contributions, including both original sequence submissions and community annotation, are being accomplished through the use of a graphical client-server interface tool, the GSDB Annotator, and via GIO (GSDB Input/Output) files. Data retrieval services are being provided through a new Web Query Tool and direct SQL. All methods of data contribution and data retrieval fully support the new data types that have been incorporated into GSDB, including discontiguous sequences, multiple sequence alignments, and community annotation.
authors.affiliation: National Center for Genome Resources, 1800A Old Pecos Trail, Santa Fe, NM 87505, USA. cah@ncgr.org
authors.forename: C
authors.initials: C
authors.lastname: Harger
authors.forename: M
authors.initials: M
authors.lastname: Skupski
authors.forename: E
authors.initials: E
authors.lastname: Allen
authors.forename: C
authors.initials: C
authors.lastname: Clark
authors.forename: D
authors.initials: D
authors.lastname: Crowley
authors.forename: E
authors.initials: E
authors.lastname: Dickinson
authors.forename: D
authors.initials: D
authors.lastname: Easley
authors.forename: A
authors.initials: A
authors.lastname: Espinosa-Lujan
authors.forename: A
authors.initials: A
authors.lastname: Farmer
authors.forename: C
authors.initials: C
authors.lastname: Fields
authors.forename: L
authors.initials: L
authors.lastname: Flores
authors.forename: L
authors.initials: L
authors.lastname: Harris
authors.forename: G
authors.initials: G
authors.lastname: Keen
authors.forename: M
authors.initials: M
authors.lastname: Manning
authors.forename: M
authors.initials: M
authors.lastname: McLeod
authors.forename: J
authors.initials: J
authors.lastname: O'Neill
authors.forename: M
authors.initials: M
authors.lastname: Pumilia
authors.forename: R
authors.initials: R
authors.lastname: Reinert
authors.forename: D
authors.initials: D
authors.lastname: Rider
authors.forename: J
authors.initials: J
authors.lastname: Rohrlich
authors.forename: Y
authors.initials: Y
authors.lastname: Romero
authors.forename: J
authors.initials: J
authors.lastname: Schwertfeger
authors.forename: G
authors.initials: G
authors.lastname: Seluja
authors.forename: A
authors.initials: A
authors.lastname: Siepel
authors.forename: P A
authors.initials: PA
authors.lastname: Schad
mesh_terms: D000818:Animals; D001483:Base Sequence; D016208:Databases, Factual; D006801:Humans; D017149:Private Sector; D012984:Software