title: O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins.
abstract: O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type. O-GLYCBASE is now fully cross-referenced to the SWISS-PROT, PIR, PROSITE, PDB, EMBL, HSSP, LISTA and MIM databases. Compared with version 1.0 the number of entries have increased by 34%. Revision of the O-glycan assignment was performed on 20% of the entries. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through WWW or by anonymous FTP.
authors.affiliation: Center for Biological Sequence Analysis, The Technical University of Denmark, Building 206, DK-2800 Lyngby, Denmark. janhan@cbs.dtu.dk
authors.forename: J E
authors.initials: JE
authors.lastname: Hansen
authors.forename: O
authors.initials: O
authors.lastname: Lund
authors.forename: K
authors.initials: K
authors.lastname: Rapacki
authors.forename: S
authors.initials: S
authors.lastname: Brunak
mesh_terms: D000465:Algorithms; D000595:Amino Acid Sequence; D000818:Animals; D016208:Databases, Factual; D006023:Glycoproteins / Q000737:chemistry*; D006031:Glycosylation; D006801:Humans; D008969:Molecular Sequence Data; D009077:Mucins / Q000737:chemistry
chemical_list: D006023:Glycoproteins; D009077:Mucins