Quantitation of chemical exchange rates using pulsed-field-gradient diffusion measurements.
A new approach to the quantitation of chemical exchange rates is presented, and its utility is illustrated with application to the exchange of protein amide protons with bulk water. The approach consists of a selective-inversion exchange HMQC experiment in which a short spin echo diffusion filter has been inserted into the exchange period. In this way; the kinetics of exchange are encoded directly in an apparent diffusion coefficient which is a function of the position of the diffusion filter in the pulse sequence. A detailed theoretical analysis of this experiment indicates that, in addition to the measurement of simple exchange rates, the experiment is capable of measuring the effect of mediated exchange, e.g. the transfer of magnetization from bulk water to an amide site mediated by an internal bound water molecule or a labile protein side-chain proton in fast exchange with bulk water. Experimental results for rapid water/amide exchange in acyl carrier protein are shown to be quantitatively consistent with the exchange rates measured using a selective-inversion exchange experiment.
Andrec
M
M
Department of Chemistry, Yale University, New Haven, CT 06520-8107, USA.
Prestegard
J H
JH
D000213:Acyl Carrier Protein / Q000737:chemistry*; D000577:Amides; D000595:Amino Acid Sequence; D004058:Diffusion; D007700:Kinetics; D009682:Magnetic Resonance Spectroscopy / Q000379:methods*; D008962:Models, Theoretical; D011487:Protein Conformation; D011994:Recombinant Proteins / Q000737:chemistry; D014867:Water
D000213:Acyl Carrier Protein; D000577:Amides; D011994:Recombinant Proteins; D014867:Water