Density functional calculations on model tyrosyl radicals.
A gradient-corrected density functional theory approach (PWP86) has been applied, together with large basis sets (IGLO-III), to investigate the structure and hyperfine properties of model tyrosyl free radicals. In nature, these radicals are observed in, e.g., the charge transfer pathways in photosystem II (PSII) and in ribonucleotide reductases (RNRs). By comparing spin density distributions and proton hyperfine couplings with experimental data, it is confirmed that the tyrosyl radicals present in the proteins are neutral. It is shown that hydrogen bonding to the phenoxyl oxygen atom, when present, causes a reduction in spin density on O and a corresponding increase on C4. Calculated proton hyperfine coupling constants for the beta-protons show that the alpha-carbon is rotated 75-80 degrees out of the plane of the ring in PSII and Salmonella typhimurium RNR, but only 20-30 degrees in, e.g., Escherichia coli, mouse, herpes simplex, and bacteriophage T4-induced RNRs. Furthermore, based on the present calculations, we have revised the empirical parameters used in the experimental determination of the oxygen spin density in the tyrosyl radical in E. coli RNR and of the ring carbon spin densities, from measured hyperfine coupling constants.
Himo
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Department of Physics, Arrhenius Laboratories, Stockholm University, Sweden.
Gräslund
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Eriksson
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LA
D004583:Electrons; D005609:Free Radicals / Q000737:chemistry; D006860:Hydrogen Bonding; D008958:Models, Molecular; D010636:Phenols / Q000737:chemistry; D045322:Photosynthetic Reaction Center Complex Proteins / Q000737:chemistry* / Q000378:metabolism; D045332:Photosystem II Protein Complex; D011789:Quantum Theory; D012264:Ribonucleotide Reductases / Q000737:chemistry* / Q000378:metabolism; D012486:Salmonella typhimurium / Q000737:chemistry / Q000201:enzymology; D014443:Tyrosine / Q000737:chemistry* / Q000378:metabolism
D005609:Free Radicals; D010636:Phenols; D045322:Photosynthetic Reaction Center Complex Proteins; D045332:Photosystem II Protein Complex; D014443:Tyrosine; C042291:4-ethylphenol; D012264:Ribonucleotide Reductases