title: Enhancer analysis of the mouse HNF-3 beta gene: regulatory elements for node/notochord and floor plate are independent and consist of multiple sub-elements.
abstract: BACKGROUND
  Axial pattern formation in vertebrate embryos depends on signals from the node and, later, from the notochord and floor plate. Previous studies have shown that HNF-3 beta, a member of the winged-helix transcription factor family, plays key roles in the development of all three organizing centres.
  
  
  RESULTS
  Enhancer analysis of HNF-3 beta has therefore been performed using lacZ reporter gene constructs in transgenic mouse embryos. This has led to the identification of independent node/notochord and floor plate enhancers, at positions far upstream (-15 to -14 kb) and downstream (+6 to +11 kb) of the transcription star site, respectively. The node/notochord enhancer activity has been localized to a 520 bp fragment. Floor plate gene expression requires a combination of two separate fragments of the enhancer. Deletion analysis of one of these fragments (400 bp) has identified subregions required for the initiation and the maintenance of floor plate expression, and for the suppression of ectopic expression within the neural tube.
  
  
  CONCLUSIONS
  We conclude that HNF-3 beta gene expression in the node/notochord and in the floor plate are controlled through different enhancers, which consist of positive and negative elements.
authors.affiliation: Howard Hughes Medical Institute, Vanderbilt University School of Medicine, Nashville, TN 37232-2175, USA.
authors.forename: H
authors.initials: H
authors.lastname: Sasaki
authors.forename: B L
authors.initials: BL
authors.lastname: Hogan
mesh_terms: D000818:Animals; D001483:Base Sequence; D004247:DNA / Q000235:genetics; D017931:DNA Primers / Q000235:genetics; D004268:DNA-Binding Proteins / Q000235:genetics*; D015252:Deoxyribonucleases, Type II Site-Specific; D005314:Embryonic and Fetal Development / Q000235:genetics*; D004742:Enhancer Elements, Genetic; D005260:Female; D018507:Gene Expression Regulation, Developmental; D005809:Genes, Regulator; D051542:Hepatocyte Nuclear Factor 3-beta; D008297:Male; D051379:Mice; D008810:Mice, Inbred C57BL; D008811:Mice, Inbred DBA; D008822:Mice, Transgenic; D009672:Notochord / Q000196:embryology / Q000378:metabolism; D009687:Nuclear Proteins / Q000235:genetics*; D011247:Pregnancy; D014157:Transcription Factors / Q000235:genetics*
chemical_list: D017931:DNA Primers; D004268:DNA-Binding Proteins; C496503:Foxa2 protein, mouse; D009687:Nuclear Proteins; D014157:Transcription Factors; D051542:Hepatocyte Nuclear Factor 3-beta; D004247:DNA; D015252:Deoxyribonucleases, Type II Site-Specific; C024403:GGCC-specific type II deoxyribonucleases