title: Comparison of hepatitis C virus serotyping and genotyping in French patients.
abstract: BACKGROUND
  Hepatitis C virus (HCV) serotyping has been proposed as an alternative assay to determine the respective genotype as it is more rapid, simple and less expensive than polymerase chain reaction (PCR) based typing methods.
  
  
  OBJECTIVE
  A serotyping assay was compared with a genotyping assay to determine the infecting hepatitis C virus type in chronically HCV infected patients eligible for interferon therapy.
  
  
  METHODS
  An enzyme immunoassay (HC01, Murex) was tested to identify HCV types 1, 2 and 3 specific antibodies in 134 PCR-positive sera from chronically infected patients which had been previously genotyped by a reverse hybridization assay (INNO-LiPA HCV I, Innogenetics). Respectively nine and seven sera were from HIV-seropositive and hemodialysis patients. Unreactive sera and those with discrepant results were retested by a new version (HC02) extended to types 4, 5 and 6.
  
  
  RESULTS
  The distribution frequency of HCV genotypes was subtype 1a, 16.4%; subtype 1b, 46.3%; subtype 2a, 7.5%; subtype 3a, 20.9%; type 4, 4.5%; type 5, 0.7%; and co-infections, 3.7%. Among all the patients, 95% were of type 1, 2 or 3. The antibody reactivities of hemodialysis (1/7; P < 0.05) and HIV-seropositive patients (4/9; P = 0.06) were lower than for the patients seen at the hepatology unit (87/118). For these latter patients, the serotyping assay was interpretable in 71% and concordant in 64% of the samples with the genotyping assay. Out of the 84 samples with interpretable results, 75 sera were correctly serotyped (89% specificity). The two mixed results obtained by serotyping did not correspond to genotype co-infections (n = 3) and reciprocally. Six discrepancies were ruled out by the new assay, but the 2 untypeable sera remained unsolved, and four out of six sera with genotype 4 were serotyped as type 5.
  
  
  CONCLUSIONS
  Serotyping could be an attractive approach if the reactivity was improved and the subtyping possible.
authors.affiliation: Virology Laboratory, CHU-Hôpital Sud, Amiens, France.
authors.forename: S
authors.initials: S
authors.lastname: Castelain
authors.forename: P
authors.initials: P
authors.lastname: Zawadzki
authors.forename: H
authors.initials: H
authors.lastname: Khorsi
authors.forename: J P
authors.initials: JP
authors.lastname: Darchis
authors.forename: D
authors.initials: D
authors.lastname: Capron
authors.forename: J M
authors.initials: JM
authors.lastname: Sueur
authors.forename: F
authors.initials: F
authors.lastname: Eb
authors.forename: G
authors.initials: G
authors.lastname: Duverlie
mesh_terms: D000328:Adult; D005260:Female; D005602:France; D005838:Genotype; D006679:HIV Seropositivity / Q000150:complications; D016174:Hepacivirus / Q000737:chemistry / Q000145:classification* / Q000235:genetics*; D006801:Humans; D008297:Male; D008875:Middle Aged; D016133:Polymerase Chain Reaction; D012367:RNA, Viral / Q000097:blood / Q000235:genetics; D012698:Serologic Tests; D012703:Serotyping
chemical_list: D012367:RNA, Viral