title: Complexity of IL-1 beta induced gene expression pattern in human articular chondrocytes.
abstract: The mRNA fingerprinting technique, differential display reverse transcription polymerase chain (DDRT-PCR), was used to detect changes in the overall pattern of gene expression in human articular knee chondrocytes-induced by interleukin-1 beta (IL-1 beta), the prototypical inducer of catabolic responses in degenerate joint diseases. One hundred different primer combinations generated approximately 10,000 different PCR fragments for IL-1 beta treated, as well as for untreated human chondrocytes, cultivated in alginate beads. This represented 53% of all expressed chondrocyte genes as based on statistical considerations. Side by side comparisons of differential display patterns originating from two different donor tissues yielded 44 reproducibly, differentially-displayed cDNA fragments, which were subcloned and sequenced. Sequence homology searches revealed sequence identities to the human necrosis factor alpha (TNF-alpha) and IL-1 regulated gene TSG-6, fibronectin, osteopontin, calnexin, and the DNA repair enzyme ERCC5. The differential expression was confirmed with Northern and quantitative PCR analyses. The known function of these genes and their known IL-1 responsiveness indicate that the employed model system reflects the pleiotropic effects of IL-1 on the overall gene expression in human articular chondrocytes and identifies genes involved in very different biochemical pathways. Twenty-seven cDNAs lacked sequence homologies to known genes and may represent novel genes.
authors.affiliation: Hoechst AG, Wiesbaden, Germany.
authors.forename: D
authors.initials: D
authors.lastname: Margerie
authors.forename: J
authors.initials: J
authors.lastname: Flechtenmacher
authors.forename: F H
authors.initials: FH
authors.lastname: Büttner
authors.forename: A
authors.initials: A
authors.lastname: Karbowski
authors.forename: W
authors.initials: W
authors.lastname: Puhl
authors.forename: R
authors.initials: R
authors.lastname: Schleyerbach
authors.forename: E
authors.initials: E
authors.lastname: Bartnik
mesh_terms: D000368:Aged; D015152:Blotting, Northern; D002358:Cartilage, Articular / Q000378:metabolism* / Q000473:pathology; D018929:Cell Culture Techniques; D018076:DNA, Complementary / Q000235:genetics; D005260:Female; D005786:Gene Expression Regulation; D006801:Humans; D007375:Interleukin-1 / Q000494:pharmacology*; D008875:Middle Aged; D008969:Molecular Sequence Data; D010003:Osteoarthritis / Q000235:genetics* / Q000378:metabolism / Q000473:pathology; D016133:Polymerase Chain Reaction; D012333:RNA, Messenger / Q000235:genetics
chemical_list: D018076:DNA, Complementary; D007375:Interleukin-1; D012333:RNA, Messenger