title: Molecular phylogenetic studies on Brugia filariae using Hha I repeat sequences.
abstract: This paper is the first molecular phylogenetic study on Brugia parasites (family Onchocercidae) which includes 6 of the 10 species of this genus: B. beaveri Ash et Little, 1964; B. buckleyi Dissanaike et Paramananthan, 1961: B. malayi (Brug, 1927) Buckley, 1960; B. pahangi (Buckley et Edeson, 1956) Buckley, 1960; B. patei (Buckley, Nelson er Heisch, 1958) Buckley, 1960 and B. timori Partono et al., 1977. Hha l repeat sequences are 322 nucleotides long, highly repeated, tandemly arranged and unique to the nuclear genomes of the genus Brugia. Hha l repeat sequence data was collected by PCR, cloning and dideoxy sequencing. The Hha l repeat sequences were aligned and analyzed by maximum parsimony algorithms, distance methods and maximum likelihood methods to construct phylogenetic trees. Bootstrap analysis was used to test the robustness of the different phylogenetic reconstructions. The data indicated that the Hha l repeat sequences are highly conserved within species yet differ significantly between species. The various tree-building methods gave identical results. Bootstrap analyses on the Hha l repeat sequence data set identified at least two clades: the B. pahangi-B. beaveri clade and the B. malayi-B. timori-B. buckleyi clade; the first clade includes parasites of carnivores from Asia and America; the second includes species from primates and lagomorphs from Asiatic region. It was also noted that the Hha l repeat sequences obtained from B. malayi were identical to those obtained from B. timori, indicating very recent speciation.
authors.affiliation: Program in Molecular and Cellular Biology, University of Massachusetts at Amherst 01003, USA.
authors.forename: H
authors.initials: H
authors.lastname: Xie
authors.forename: O
authors.initials: O
authors.lastname: Bain
authors.forename: S A
authors.initials: SA
authors.lastname: Williams
mesh_terms: D000465:Algorithms; D000818:Animals; D001483:Base Sequence; D002009:Brugia / Q000145:classification* / Q000235:genetics*; D016384:Consensus Sequence; D018509:DNA, Helminth / Q000737:chemistry*; D015252:Deoxyribonucleases, Type II Site-Specific; D016013:Likelihood Functions; D008969:Molecular Sequence Data; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D012091:Repetitive Sequences, Nucleic Acid; D016415:Sequence Alignment
chemical_list: D018509:DNA, Helminth; D015252:Deoxyribonucleases, Type II Site-Specific; C037130:GCGC-specific type II deoxyribonucleases