title: Influence of the last amino acid in the nascent peptide on EF-Tu during decoding.
abstract: The last two amino acids of the nascent peptide at the ribosomal P-site influence the efficiency of termination readthrough at the stop codon UGA (Mottagui-Tabar et al (1994) EMBO J 13, 249-257; Björnsson et al (1996) EMBO J 15, 1696-1704). Here we analyze this effect on readthrough by wild type or a UGA suppressor form (Su9) of tRNA(Trp) by varying the codons at positions-1 and -2 at the 5' side of UGA. Strains with wild-type or mutant (ArBr) forms of elongation factor Tu (EF-Tu) were analyzed (Vijgenboom et al (1985) EMBO J4, 1049-1052). The effect on readthrough by changing these-1 and -2 codons is different on the two forms of tRNA(Trp) and is also dependent on the structure of EF-Tu. Readthrough by the tRNA(Trp)-derived suppressor, but not wild-type tRNA(Trp), is sensitive to the van der Waals volume of the last amino acid in the nascent peptide. Together with mutant EF-Tu, both forms of tRNA(Trp) are sensitive. The data suggest that the C-terminal amino acid in the nascent peptide is in a functional interaction with the EF-Tu ternary complex. This interaction is changed by mutation in tRNA(Trp) at position 24 or in EF-Tu at position 375. No indication of a changed interaction between the mutant EF-Tu and the penultimate amino acid could be found. Mutant forms of RF2 (Mikuni et al (1991) Biochimie 73, 1509-1516) and ribosomal proteins S4 and S12 (Fáxen et al (1988) J Bacteriol 170, 3756-3760) were found not be altered in sensitivity to the last two amino acids in the nascent peptide.
authors.affiliation: Department of Microbiology, Stockholm University, Sweden.
authors.forename: S
authors.initials: S
authors.lastname: Mottagui-Tabar
authors.forename: L A
authors.initials: LA
authors.lastname: Isaksson
mesh_terms: D003062:Codon; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism*; D010444:Peptide Elongation Factor Tu / Q000737:chemistry* / Q000378:metabolism*; D017354:Point Mutation; D017433:Protein Structure, Secondary; D012364:RNA, Transfer, Trp / Q000378:metabolism; D012044:Regression Analysis; D012270:Ribosomes / Q000378:metabolism
chemical_list: D003062:Codon; D012364:RNA, Transfer, Trp; D010444:Peptide Elongation Factor Tu