title: Frequency of the variant allele CYP2D6(C) among North American Caucasian lung cancer patients and controls.
abstract: Previous reports of the association between the debrisoquine polymorphism and lung cancer risk are conflicting. Following the report of an association between lung cancer risk and the variant allele CYP2D6(C), we examined the presence of this allele in 98 incident Caucasian lung cancer patients and 110 age, race, and sex matched hospital controls from a case-control study conducted at the National Naval Medical Center in Bethesda, MD. Debrisoquine metabolic phenotype was determined by debrisoquine administration and analysis of debrisoquine and 4-hydroxydebrisoquine in the subsequent 8 h urine collected. Genomic DNA was genotyped by a specific polymerase chain reaction amplification and subsequent restriction enzyme digestion, and Southern analysis. Twenty subjects were heterozygous for the CYP2D6(C) allele but none were homozygous for this allele. There was no significant difference in frequency of CYP2D6(C) between lung cancer patients and controls (5.61% and 4.09%, respectively), and there was no significant heterogeneity among cases by histologic type of lung cancer (P = 0.08). However, 7 of 11 cases (64%) with the CYP2D6(C) allele had small cell lung cancer, and none had squamous cell carcinoma. Carrying the CYP2D6(C) allele did not impair debrisoquine metabolism to the same degree as the known inactivating mutations, CYP2D6(A) and CYP2D6(B), or deletion of CYP2D6. Thus, the CYP2D6(C) allele does not encode a completely inactivating mutation, and the suggestion of a role for this variant allele in the risk for specific histologic types of lung cancer justifies further investigation.
authors.affiliation: H. Lee Moffitt Cancer Center and Research Institute, University of South Florida, Tampa 33612, USA.
authors.forename: G L
authors.initials: GL
authors.lastname: Shaw
authors.forename: B
authors.initials: B
authors.lastname: Weiffenbach
authors.forename: R T
authors.initials: RT
authors.lastname: Falk
authors.forename: J N
authors.initials: JN
authors.lastname: Frame
authors.forename: H J
authors.initials: HJ
authors.lastname: Issaq
authors.forename: D T
authors.initials: DT
authors.lastname: Moir
authors.forename: N
authors.initials: N
authors.lastname: Caporaso
mesh_terms: D000483:Alleles; D018288:Carcinoma, Small Cell / Q000201:enzymology / Q000235:genetics; D002294:Carcinoma, Squamous Cell / Q000201:enzymology / Q000235:genetics; D016022:Case-Control Studies; D019389:Cytochrome P-450 CYP2D6 / Q000235:genetics*; D003647:Debrisoquin / Q000378:metabolism; D005260:Female; D005787:Gene Frequency / Q000235:genetics*; D014644:Genetic Variation; D005838:Genotype; D006579:Heterozygote; D006720:Homozygote; D006801:Humans; D008175:Lung Neoplasms / Q000201:enzymology / Q000453:epidemiology / Q000235:genetics*; D008297:Male; D009656:North America / Q000453:epidemiology; D010641:Phenotype; D011247:Pregnancy; D044465:White People / Q000235:genetics*
chemical_list: D019389:Cytochrome P-450 CYP2D6; D003647:Debrisoquin