title: Differences in hepatitis C virus quasispecies composition between liver, peripheral blood mononuclear cells and plasma.
abstract: Hepatitis C virus (HCV) exists in vivo as a highly variable mixture of closely related genomes (quasispecies), but the pathogenetic significance of such heterogeneity is still largely unknown. To investigate this issue, we compared the composition of HCV quasispecies found in the liver, peripheral blood mononuclear cells (PBMC) and plasma of ten patients by single-strand conformation polymorphism analysis of the E2/NS1 region and sequencing of the variants detected. We found considerable quasispecies differences between the liver and PBMC in all the patients, involving variant numbers, relative quantities and relative electrophoretic mobilities, but no apparent tissue-specific trend. Genome variants present in the liver and/or PBMC were not detected in the corresponding plasma samples, while certain HCV variants were present only in plasma. No dominant amino acids or amino acid pattern characteristic of variants present solely in the PBMC were detected in the E2/NS1 region sequenced.
authors.affiliation: Department of Biomedicine and Retrovirus Center, University of Pisa, Italy.
authors.forename: F
authors.initials: F
authors.lastname: Maggi
authors.forename: C
authors.initials: C
authors.lastname: Fornai
authors.forename: M L
authors.initials: ML
authors.lastname: Vatteroni
authors.forename: M
authors.initials: M
authors.lastname: Giorgi
authors.forename: A
authors.initials: A
authors.lastname: Morrica
authors.forename: M
authors.initials: M
authors.lastname: Pistello
authors.forename: G
authors.initials: G
authors.lastname: Cammarota
authors.forename: S
authors.initials: S
authors.lastname: Marchi
authors.forename: P
authors.initials: P
authors.lastname: Ciccorossi
authors.forename: A
authors.initials: A
authors.lastname: Bionda
authors.forename: M
authors.initials: M
authors.lastname: Bendinelli
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D004279:DNA, Viral; D018740:Genetic Heterogeneity; D016174:Hepacivirus / Q000145:classification / Q000235:genetics*; D006526:Hepatitis C / Q000097:blood / Q000821:virology*; D006801:Humans; D007963:Leukocytes, Mononuclear / Q000821:virology*; D008099:Liver / Q000473:pathology / Q000821:virology*; D008969:Molecular Sequence Data; D018807:Polymorphism, Single-Stranded Conformational; D015203:Reproducibility of Results; D014759:Viral Envelope Proteins / Q000235:genetics; D017361:Viral Nonstructural Proteins / Q000235:genetics
chemical_list: D004279:DNA, Viral; D014759:Viral Envelope Proteins; D017361:Viral Nonstructural Proteins; C091015:glycoprotein E2, Hepatitis C virus