title: A combinatorial approach defines specificities of members of the caspase family and granzyme B. Functional relationships established for key mediators of apoptosis.
abstract: There is compelling evidence that members of the caspase (interleukin-1beta converting enzyme/CED-3) family of cysteine proteases and the cytotoxic lymphocyte-derived serine protease granzyme B play essential roles in mammalian apoptosis. Here we use a novel method employing a positional scanning substrate combinatorial library to rigorously define their individual specificities. The results divide these proteases into three distinct groups and suggest that several have redundant functions. The specificity of caspases 2, 3, and 7 and Caenorhabditis elegans CED-3 (DEXD) suggests that all of these enzymes function to incapacitate essential homeostatic pathways during the effector phase of apoptosis. In contrast, the optimal sequence for caspases 6, 8, and 9 and granzyme B ((I/L/V)EXD) resembles activation sites in effector caspase proenzymes, consistent with a role for these enzymes as upstream components in a proteolytic cascade that amplifies the death signal.
authors.affiliation: Department of Enzymology, Merck Research Laboratories, Rahway, New Jersey 07065, USA. Nancy_Thornberry@merck.com
authors.forename: N A
authors.initials: NA
authors.lastname: Thornberry
authors.forename: T A
authors.initials: TA
authors.lastname: Rano
authors.forename: E P
authors.initials: EP
authors.lastname: Peterson
authors.forename: D M
authors.initials: DM
authors.lastname: Rasper
authors.forename: T
authors.initials: T
authors.lastname: Timkey
authors.forename: M
authors.initials: M
authors.lastname: Garcia-Calvo
authors.forename: V M
authors.initials: VM
authors.lastname: Houtzager
authors.forename: P A
authors.initials: PA
authors.lastname: Nordstrom
authors.forename: S
authors.initials: S
authors.lastname: Roy
authors.forename: J P
authors.initials: JP
authors.lastname: Vaillancourt
authors.forename: K T
authors.initials: KT
authors.lastname: Chapman
authors.forename: D W
authors.initials: DW
authors.lastname: Nicholson
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D017209:Apoptosis / Q000502:physiology*; D017173:Caenorhabditis elegans / Q000201:enzymology; D029742:Caenorhabditis elegans Proteins; D020169:Caspases; D003546:Cysteine Endopeptidases / Q000378:metabolism*; D053804:Granzymes; D006801:Humans; D008322:Mammals; D011994:Recombinant Proteins / Q000378:metabolism; D012697:Serine Endopeptidases / Q000378:metabolism*; D013379:Substrate Specificity
chemical_list: D029742:Caenorhabditis elegans Proteins; D011994:Recombinant Proteins; C509213:GZMB protein, human; D053804:Granzymes; D012697:Serine Endopeptidases; D020169:Caspases; D003546:Cysteine Endopeptidases; C089223:ced-3 protein, C elegans