Sequence analysis and comparison of 190 K surface antigen gene fragment of a new species of spotted fever group rickettsiae.
A 533 bp long PCR product amplified from rickettsial strain HL-93 DNA with the primer pair Rr 190.70p and Rr 190.602n, designed from DNA sequence encoding 190 K protein antigen of R. rickettsii, was cloned into plasmid vector PGEM-T and sequenced. The primer-flanking region of the product, an open reading frame, was 491 bp long. The sequence of the product was compared with those of the corresponding regions of DNAs of R. rickettsii (strain R), R. japonica (strain VR 1363) and R. conorii (strain Malish 7) which were reported earlier by other authors. The results showed that 23, 31 and 52 nucleotides in the compared sequence in strain HL-93 differed from those in R. japonica, R. rickettsii and R conorii, respectively. The homologies of strain HL-93 with R. japonica, R. rickettsii and R. conorii were 95.6%, 94% and 90% in nucleotide, and 89%, 87% and 80% in putative amino acid sequences. We consider strain HL-93 as a new member of the spotted fever group (SFG) rickettsiae on the basis of a high degree of homology and genetic divergence in the nucleotide sequence of a part of the 190 K protein gene.
Zhang
J Z
JZ
Department of Rickettsiology, Chinese Academy of Preventive Medicine, Beijing, P.R. of China.
Fan
M Y
MY
Bi
D Z
DZ
D000595:Amino Acid Sequence; D000818:Animals; D000942:Antigens, Bacterial / Q000737:chemistry / Q000235:genetics*; D000954:Antigens, Surface / Q000737:chemistry / Q000235:genetics*; D001426:Bacterial Proteins / Q000737:chemistry / Q000235:genetics* / Q000276:immunology*; D001483:Base Sequence; D003001:Cloning, Molecular; D004269:DNA, Bacterial / Q000235:genetics; D008969:Molecular Sequence Data; D008970:Molecular Weight; D016133:Polymerase Chain Reaction; D011995:Recombination, Genetic; D012281:Rickettsia / Q000145:classification / Q000235:genetics* / Q000276:immunology*; D012284:Rickettsia rickettsii / Q000235:genetics / Q000276:immunology; D017422:Sequence Analysis, DNA; D013045:Species Specificity
D000942:Antigens, Bacterial; D000954:Antigens, Surface; D001426:Bacterial Proteins; D004269:DNA, Bacterial