title: A trimeric, alpha-helical, coiled coil peptide: association stoichiometry and interaction strength by analytical ultracentrifugation.
abstract: Alpha-helical coiled coils are proving to be almost ideal systems for the modelling of peptide and protein self-association processes. Stable oligomeric systems, in which the stoichiometry is well defined, can be produced by the careful selection of the appropriate amino acid sequence, although the principles behind this are still not fully understood. Here we report on a 35 residue peptide, FZ, synthesized by the solid phase method, which was originally designed to form a dimer, but which, in fact, associates to the trimeric state. A detailed characterization of the associative properties of the peptide has been performed by circular dichroism spectroscopy and, in particular, by sedimentation equilibrium in the analytical ultracentrifuge. The presence of the trimeric state, which is stable even at low peptide concentrations, has been confirmed by various independent methods of analysis for molar mass. The effects of both temperature and of guanidinium chloride on the peptide have been investigated and both found to be peptide-concentration dependent. The unfolding induced by the denaturant cannot be adequately described by a simple, two state monomer-trimer equilibrium.
authors.affiliation: Institut für Polymere, ETH-Zentrum, Zurich, Switzerland. rthomas@ifp.mat.ethz.ch
authors.forename: R M
authors.initials: RM
authors.lastname: Thomas
authors.forename: A
authors.initials: A
authors.lastname: Zampieri
authors.forename: K
authors.initials: K
authors.lastname: Jumel
authors.forename: S E
authors.initials: SE
authors.lastname: Harding
mesh_terms: D000595:Amino Acid Sequence; D002942:Circular Dichroism; D019791:Guanidine; D006146:Guanidines; D008969:Molecular Sequence Data; D009994:Osmolar Concentration; D010455:Peptides / Q000737:chemistry*; D011489:Protein Denaturation; D017433:Protein Structure, Secondary; D012997:Solvents; D013816:Thermodynamics; D014461:Ultracentrifugation / Q000379:methods
chemical_list: D006146:Guanidines; D010455:Peptides; D012997:Solvents; D019791:Guanidine