title: Macromolecular mimicry in protein biosynthesis.
abstract: Elongation factor Tu (EF-Tu) is a G-protein which, in its active GTP conformation, protects and carries aminoacylated tRNAs (aa-tRNAs) to the ribosome during protein biosynthesis. EF-Tu consists of three structural domains of which the N-terminal domain consists of two special regions (switch I and switch II) which are structurally dependent on the type of the bound nucleotide. Structural studies of the complete functional cycle of EF-Tu reveal that it undergoes rather spectacular conformational changes when activated from the EF-Tu.GDP form to the EF-Tu.GTP form. In its active form, EF-Tu.GTP without much further structural change interacts with aa-tRNAs in the so-called ternary complex. The conformational changes of EF-Tu involve rearrangements of the secondary structures of both the switch I and switch II regions. As the switch II region forms part of the interface between domains 1 and 3, its structural rearrangement results in a very large change of the position of domain 1 relative to domains 2 and 3. The overall shape of the ternary complex is surprisingly similar to the overall shape of elongation factor G (EF-G). Thus, three domains of the protein EF-G seem to mimic the tRNA part of the ternary complex. This macromolecular mimicry has profound implications for the function of the elongation factors on the ribosome.
authors.affiliation: Institute of Molecular and Structural Biology, University of Aarhus, Denmark. jnb@kemi.aau.dk
authors.forename: J
authors.initials: J
authors.lastname: Nyborg
authors.forename: P
authors.initials: P
authors.lastname: Nissen
authors.forename: M
authors.initials: M
authors.lastname: Kjeldgaard
authors.forename: S
authors.initials: S
authors.lastname: Thirup
authors.forename: G
authors.initials: G
authors.lastname: Polekhina
authors.forename: B F
authors.initials: BF
authors.lastname: Clark
authors.forename: L
authors.initials: L
authors.lastname: Reshetnikova
mesh_terms: D000595:Amino Acid Sequence; D006153:Guanosine Diphosphate / Q000378:metabolism; D006160:Guanosine Triphosphate / Q000378:metabolism; D046911:Macromolecular Substances; D008958:Models, Molecular; D018716:Molecular Mimicry; D008969:Molecular Sequence Data; D010441:Peptide Chain Elongation, Translational; D010444:Peptide Elongation Factor Tu / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D014176:Protein Biosynthesis; D017510:Protein Folding; D017433:Protein Structure, Secondary; D017386:Sequence Homology, Amino Acid
chemical_list: D046911:Macromolecular Substances; D006153:Guanosine Diphosphate; D006160:Guanosine Triphosphate; D010444:Peptide Elongation Factor Tu