title: Splicing and intron-internal RNA editing of trnK-matK transcripts in barley plastids: support for MatK as an essential splice factor.
abstract: Group II introns frequently require assistance by specific factors, maturases, for folding and effective splicing in vivo. The only putative maturase of higher plant chloroplasts is encoded by matK, located in the intron of trnK. We show that in barley matK transcripts are modified at a first codon base by C-to-U RNA editing. The resulting H --> Y substitution restores a sequence motif that is present in maturases of yeast and plant mitochondria and of Lactococcus ltrA and that is positioned within the X domain. Processing of trnK-matK transcripts was further investigated in plastids lacking functional ribosomes due to a mutation. Absence of the intron-encoded matK gene product in these plastids is correlated with the accumulation of precursor transcripts for tRNALys(UUU)-matK, processed to different degrees, and by the lack of mature and spliced tRNA molecules. These results suggest an essential role of MatK for splicing of its own transcript in vivo. Processing of the 5' end of trnK exon 1 was found to proceed efficiently also in the mutant plastids although the two tRNA exons were separated by the 2481 nt intron. Consequently, presence of the intron does not interfere with the formation of mature 5' termini.
authors.affiliation: Humboldt-University, Department of Biology, Berlin, Germany.
authors.forename: J
authors.initials: J
authors.lastname: Vogel
authors.forename: T
authors.initials: T
authors.lastname: Hübschmann
authors.forename: T
authors.initials: T
authors.lastname: Börner
authors.forename: W R
authors.initials: WR
authors.lastname: Hess
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D002736:Chloroplasts / Q000201:enzymology / Q000235:genetics*; D017931:DNA Primers; D004722:Endoribonucleases / Q000235:genetics*; D017343:Genes, Plant; D001467:Hordeum; D007438:Introns; D008969:Molecular Sequence Data; D009713:Nucleotidyltransferases / Q000235:genetics*; D017393:RNA Editing; D012326:RNA Splicing; D018749:RNA, Plant / Q000378:metabolism; D012343:RNA, Transfer / Q000378:metabolism; D012270:Ribosomes / Q000235:genetics; D014158:Transcription, Genetic
chemical_list: D017931:DNA Primers; D018749:RNA, Plant; D012343:RNA, Transfer; D009713:Nucleotidyltransferases; C034038:mRNA maturase; D004722:Endoribonucleases