Ta6Br(2+)12, a tool for phase determination of large biological assemblies by X-ray crystallography.
The title compound Ta6Br(2+)12 is of interest for the analysis of biological structures as a heavy-metal derivative with great potential for the structure determination of large protein systems. In macromolecular crystallography the phases of the measured structure factor amplitudes have to be determined. The most widely used method for novel structures is isomorphous replacement by introducing electron-rich compounds into the protein crystals. These compounds produce measurable changes of the diffraction intensities, which allow phase determination. We synthetized the Ta6Br(2+)12 cluster in high yields, crystallized it, and determined its crystal structure by X-ray diffraction analysis at atomic resolution. The cluster is a regular octahedron consisting of six metal atoms with 12 bridging bromine atoms along the 12 edges of the octahedron. The cluster is compact, of approximately spherical shape with about 4.3 A radius and highly symmetrical. One Ta6Br(2+)12 ion adds 856 electrons to a protein, a considerable contribution to the scattering power even of large proteins or multimeric systems. At low resolution all atoms of the cluster scatter in phase and act as a super heavy-atom, which is easy to locate in the difference Patterson map. We investigated its binding sites in the biologically significant high-resolution structures of an antibody V(L) domain, dimethyl sulfoxide reductase, GTP-cyclohydrolase I, and the proteasome. With the randomly oriented cluster, treated as a single site scatterer, phases could be used only up to 6 A resolution. In contrast, when the cluster is correctly oriented, phases calculated from its 18 atom sites can be used to high resolution. We present the atomic structure of the Ta6Br(2+)12, describe a method to determine its localization and orientation in the unit cell of protein crystals of two different proteins, and analyse its phasing power. We show that phases can be calculated to high resolution. The phase error is lower by more than 30 degrees compared to the single site approximation, using a resolution of 2.2 A. Furthermore, Ta6Br(2+)12 has two different strong anomalous scatterers tantalum and bromine to be used for phase determination.
Knäblein
J
J
Max-Planck-Institut fur Biochemie, Abteilung Strukturforschung, Martinsried, Germany.
Neuefeind
T
T
Schneider
F
F
Bergner
A
A
Messerschmidt
A
A
Löwe
J
J
Steipe
B
B
Huber
R
R
D001665:Binding Sites; D001965:Bromides / Q000737:chemistry* / Q000378:metabolism; D018360:Crystallography, X-Ray / Q000379:methods*; D003546:Cysteine Endopeptidases / Q000737:chemistry / Q000378:metabolism; D006136:GTP Cyclohydrolase / Q000737:chemistry / Q000378:metabolism; D007147:Immunoglobulin Light Chains / Q000737:chemistry / Q000378:metabolism; D007135:Immunoglobulin Variable Region / Q000737:chemistry / Q000378:metabolism; D007506:Iron-Sulfur Proteins; D008958:Models, Molecular; D009097:Multienzyme Complexes / Q000737:chemistry / Q000378:metabolism; D010088:Oxidoreductases / Q000737:chemistry / Q000378:metabolism; D046988:Proteasome Endopeptidase Complex; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000378:metabolism; D013635:Tantalum / Q000737:chemistry* / Q000378:metabolism
D001965:Bromides; D007147:Immunoglobulin Light Chains; D007135:Immunoglobulin Variable Region; D007506:Iron-Sulfur Proteins; D009097:Multienzyme Complexes; D011506:Proteins; C107153:tantalum bromide; D013635:Tantalum; D010088:Oxidoreductases; C045664:dimethyl sulfoxide reductase; D003546:Cysteine Endopeptidases; D046988:Proteasome Endopeptidase Complex; D006136:GTP Cyclohydrolase