title: Solution scattering structural analysis of the 70 S Escherichia coli ribosome by contrast variation. I. Invariants and validation of electron microscopy models.
abstract: Solutions of selectively deuterated 70 S Escherichia coli ribosomes and of free 30 S and 50 S subunits were studied by neutron scattering using contrast variation. The integrity of the partially deuterated particles was controlled by parallel X-ray measurements. Integral parameters of the entire ribosome, of its subunits and of the protein and rRNA moieties were evaluated. The data allow an experimental validation of the two most recent electron microscopy reconstructions of the 70 S ribosome presented by the groups of J. Frank (Albany) and of M. van Heel & R. Brimacombe (Berlin). For each reconstruction, integral parameters and theoretical scattering curves from the 70 S and its subunits were calculated and compared with the experimental data. Although neither of the two models yields a comprehensive agreement with the experimental data, Frank's model provides a better fit. For the 50 S subunit of van Heel & Brimacombe's model the fit with the experimental data improves significantly when the internal channels and tunnels are filled up. The poorer fit of the latter model is thus caused by its "sponge"-like structure which may partly be due to an enhancement of high frequency contributions in some of the steps of the three-dimensional image reconstruction. It seems therefore unlikely that the ribosome has a "sponge"-like structure with a pronounced network of channels.
authors.affiliation: Hamburg Outstation, EMBL, Notkestrasse 85, Hamburg, D-22603, Germany.
authors.forename: D I
authors.initials: DI
authors.lastname: Svergun
authors.forename: N
authors.initials: N
authors.lastname: Burkhardt
authors.forename: J S
authors.initials: JS
authors.lastname: Pedersen
authors.forename: M H
authors.initials: MH
authors.lastname: Koch
authors.forename: V V
authors.initials: VV
authors.lastname: Volkov
authors.forename: M B
authors.initials: MB
authors.lastname: Kozin
authors.forename: W
authors.initials: W
authors.lastname: Meerwink
authors.forename: H B
authors.initials: HB
authors.lastname: Stuhrmann
authors.forename: G
authors.initials: G
authors.lastname: Diedrich
authors.forename: K H
authors.initials: KH
authors.lastname: Nierhaus
mesh_terms: D003903:Deuterium; D004926:Escherichia coli; D008854:Microscopy, Electron; D008958:Models, Molecular; D009502:Neutrons; D012270:Ribosomes / Q000648:ultrastructure*; D012542:Scattering, Radiation; D012996:Solutions
chemical_list: D012996:Solutions; D003903:Deuterium