title: DNA typing in thirty seconds with a microfabricated device.
abstract: We report the development of a practical ultrafast allelic profiling assay for the analysis of short tandem repeats (STRs) by using a highly optimized microfluidic electrophoresis device. We have achieved baseline-resolved electrophoretic separations of single-locus STR samples in 30 sec. Analyses of PCR samples containing the four loci CSF1PO, TPOX, THO1, and vWA (abbreviated as CTTv) were performed in less than 2 min. This constitutes a 10- to 100-fold improvement in speed relative to capillary or slab gel systems. The separation device consists of a microfabricated channel 45 micron x 100 micron in cross section and 26 mm in length, filled with a replaceable polyacrylamide matrix operated under denaturing conditions at 50 degrees C. A fluorescently labeled STR ladder was used as an internal standard for allele identification. Samples were prepared by standard procedures and only 4 microl was required for each analysis. The device is capable of repetitive operation and is suitable for automated high-speed and high-throughput applications.
authors.affiliation: Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA 02142, USA.
authors.forename: D
authors.initials: D
authors.lastname: Schmalzing
authors.forename: L
authors.initials: L
authors.lastname: Koutny
authors.forename: A
authors.initials: A
authors.lastname: Adourian
authors.forename: P
authors.initials: P
authors.lastname: Belgrader
authors.forename: P
authors.initials: P
authors.lastname: Matsudaira
authors.forename: D
authors.initials: D
authors.lastname: Ehrlich
mesh_terms: D004247:DNA / Q000235:genetics*; D004591:Electrophoresis, Polyacrylamide Gel / Q000379:methods; D005821:Genetic Techniques; D015894:Genome, Human; D006801:Humans; D016133:Polymerase Chain Reaction; D012091:Repetitive Sequences, Nucleic Acid; D012371:Robotics
chemical_list: D004247:DNA