title: A comparative NMR and molecular dynamics study of the conformations of bradykinin B1 and B2, B2, and B1-specific receptor antagonists B-9430, B-9436, and B-9858.
abstract: Extensive proton magnetic resonance experiments were carried out on three bradykinin peptide antagonists B-9430, B-9436, and B-9858 in aqueous solutions as well as in sodium dodecylsulphate micelles (B-9430 and B-9436) and CD3OH/H2O (60%/40%) mixtures for B-9858. All three peptides showed no observable secondary structure in aqueous solution. However, in their respective structure-inducing solvents, B-9430 (B1 and B2 receptor antagonist) and B-9436 (a B2 receptor antagonist) exhibit a type II beta-turn involving residues 2-5, and B-9430 also exhibits a type II' beta-turn involving residues 6-9 (in sodium dodecylsulfate micellar solutions), whereas B-9858, a B1-specific receptor antagonist, exhibits only a type II beta-turn involving residues 2-5 (in CD3OH/H2O solutions). Simulated annealing calculations on B-9858 confirm the experimental conclusions based on the nmr data. In addition, simulated annealing of the (2S, 3aS, 7aS)-octahydroindole-2-carboxylic acid (Oic residue), which is present in two of the three decapeptides studied, show that the one-chair conformation of the six-membered ring predominates, in agreement with the experimental data. The activities of these peptides are compared with their secondary structures and the specific receptor activity appears to depend on the presence of specific amino acid residues, such as N-(2-indanyl) glycine (Nig) and D[alpha-(2-indanyl) glycine] (D-Igl) as well as on elements of secondary structure.
authors.affiliation: Department of Chemistry, University of Alberta, Edmonton, Canada.
authors.forename: J
authors.initials: J
authors.lastname: Sejbal
authors.forename: Y
authors.initials: Y
authors.lastname: Wang
authors.forename: J R
authors.initials: JR
authors.lastname: Cann
authors.forename: J M
authors.initials: JM
authors.lastname: Stewart
authors.forename: L
authors.initials: L
authors.lastname: Gera
authors.forename: G
authors.initials: G
authors.lastname: Kotovych
mesh_terms: D000595:Amino Acid Sequence; D065168:Bradykinin Receptor Antagonists; D009682:Magnetic Resonance Spectroscopy / Q000379:methods; D011487:Protein Conformation; D043783:Receptor, Bradykinin B1; D043782:Receptor, Bradykinin B2; D013379:Substrate Specificity; D013816:Thermodynamics
chemical_list: D065168:Bradykinin Receptor Antagonists; D043783:Receptor, Bradykinin B1; D043782:Receptor, Bradykinin B2