title: Sequence variation and phylogenetic analysis of envelope glycoprotein of hepatitis G virus.
abstract: A transfusion-transmissible agent provisionally designated hepatitis G virus (HGV) was recently identified. In this study, we examined the variability of the HGV genome by analysing sequences in the putative envelope region from 72 isolates obtained from diverse geographical sources. The 1561 nucleotide sequence of the E1/E2/NS2a region of HGV was determined from 12 isolates, and compared with three published sequences. The most variability was observed in 400 nucleotides at the N terminus of E2. We next analysed this 400 nucleotide envelope variable region (EV) from an additional 60 HGV isolates. This sequence varied considerably among the 75 isolates, with overall identity ranging from 79.3% to 99.5% at the nucleotide level, and from 83.5% to 100% at the amino acid level. However, hypervariable regions were not identified. Phylogenetic analyses indicated that the 75 HGV isolates belong to a single genotype. A single-tier distribution of evolutionary distances was observed among the 15 E1/E2/NS2a sequences and the 75 EV sequences. In contrast, 11 isolates of HCV were analysed and showed a three-tiered distribution, representing genotypes, subtypes, and isolates. The 75 isolates of HGV fell into four clusters on the phylogenetic tree. Tight geographical clustering was observed among the HGV isolates from Japan and Korea.
authors.affiliation: Genelabs Technologies, Inc., Redwood City, California 94063, USA. moonl@genelabs.com
authors.forename: M Y
authors.initials: MY
authors.lastname: Lim
authors.forename: K
authors.initials: K
authors.lastname: Fry
authors.forename: A
authors.initials: A
authors.lastname: Yun
authors.forename: S
authors.initials: S
authors.lastname: Chong
authors.forename: J
authors.initials: J
authors.lastname: Linnen
authors.forename: K
authors.initials: K
authors.lastname: Fung
authors.forename: J P
authors.initials: JP
authors.lastname: Kim
mesh_terms: D000595:Amino Acid Sequence; D018067:Flaviviridae / Q000235:genetics*; D016679:Genome, Viral; D006023:Glycoproteins / Q000235:genetics; D006801:Humans; D008969:Molecular Sequence Data; D010802:Phylogeny; D016415:Sequence Alignment; D017421:Sequence Analysis; D014759:Viral Envelope Proteins / Q000235:genetics*
chemical_list: D006023:Glycoproteins; D014759:Viral Envelope Proteins