title: Hepatitis C serotypes in nonalcoholic and alcoholic patients.
abstract: Genotyping of the hepatitis C virus (HCV) RNA can be performed by a variety of methods following polymerase chain reaction amplification of a stable RNA portion of the genome. The gold standard is amplification of the RNA from the NS5 region, followed by direct sequencing and homology comparison. This method is extremely labor intensive. In this study, we compared an immunoblot serotyping technique (HCV SIA) to a reverse-hybridization line-probe assay (LiPA) for genotype classification among non-alcoholic HCV infected patients. We then compared and contrasted the response in this cohort to a population of alcoholic patients with HCV infection. To validate the serotype assay, sera from 110 patients with chronic HCV infection was utilized. Serotyping (Chiron SIA) and genotyping by the LiPA (Line Probe Assay, Innogenetics) reverse-hybridization technique was performed. Additionally, both methods were compared to sequence-derived genotyping in 26 patients based on PCR amplification of the NS5 region. After the validation phase, sera from 105 alcoholic patients was genotypically classified by the serologic method. The nonalcoholic and alcoholic groups were then compared with regard to serotype, demographics, and frequency of untypable test results. Among typable pairs, the overall concordance rate between serotyping and LiPA-based genotyping was 93.75%. Patients with genotype 1 by reverse hybridization demonstrated a 95.8% concordance with serotype. Untypable samples were present for both techniques, but since they occurred in different patients, the techniques were complementary. Alcoholic patients were significantly more likely to be infected with untypable serotypes than those without a pattern of alcohol abuse. These patients were also more likely to be HCV RNA negative than sera from typable patients. Serotype 1 was associated with high HCV RNA titer and poor interferon treatment response among both nonalcoholic and alcoholic patients. An immunoblot method for the evaluation of genotype classification was rapid and easily performed compared to sequence-based genotyping. There was a high degree of concordance compared to reverse-hybridization and sequence-based genotype characterization methods. Failure to detect HCV RNA in the serum is associated with a higher likelihood of classification failure. This problem was particularly prevalent in the alcoholic population. HCV RNA titers and treatment outcomes were strongly associated with serotype classification results, demonstrating clinical utility of this assay technique.
authors.affiliation: Department of Medicine and Pathology, University of Cincinnati Medical Center, Ohio 45267, USA.
authors.forename: K E
authors.initials: KE
authors.lastname: Sherman
authors.forename: C
authors.initials: C
authors.lastname: Mendenhall
authors.forename: D L
authors.initials: DL
authors.lastname: Thee
authors.forename: J
authors.initials: J
authors.lastname: O'Brien
authors.forename: S D
authors.initials: SD
authors.lastname: Rouster
mesh_terms: D000328:Adult; D000437:Alcoholism / Q000097:blood* / Q000150:complications; D018450:Disease Progression; D005260:Female; D005838:Genotype; D016174:Hepacivirus / Q000145:classification* / Q000235:genetics; D019698:Hepatitis C, Chronic / Q000097:blood / Q000150:complications; D006801:Humans; D015151:Immunoblotting; D008297:Male; D009693:Nucleic Acid Hybridization; D012367:RNA, Viral / Q000032:analysis; D017423:Sequence Analysis, RNA; D012703:Serotyping / Q000379:methods*
chemical_list: D012367:RNA, Viral