Nucleotide G-1207 of 18S rRNA is an essential component of the human 80S ribosomal decoding center.
mRNA analogues-derivatives of oligoribonucleotides consisting of two different codons and bearing an aryl azide group at the 5'-phosphates-were crosslinked to human 80S ribosomes by UV-irradiation of the various model complexes obtained in the presence of the cognate tRNAs. Three sequences, namely pUUUGUU (coding for Phe and Val), pUUCUAAA (first triplet coding for Phe and second being stop-codon), and pGUGUUU (coding for Val and Phe), have been used. Sequences of 18S rRNA containing nucleotides crosslinked to the mRNA analogues were examined by hydrolysis with RNase H in the presence of various cDNA probes. Crosslinked nucleotides were identified by primer extension. In all cases, only nucleotide G-1207 (equivalent to G-926 in Escherichia coli 16S rRNA) has been detected as crosslinked. Crosslinking of the mRNA analogues to the large ribosomal subunit was negligible.
Bulygin
K N
KN
Novosibirsk Institute of Bioorganic Chemistry, Siberian Branch of Russian Academy of Sciences.
Graifer
D M
DM
Repkova
M N
MN
Smolenskaya
I A
IA
Veniyaminova
A G
AG
Karpova
G G
GG
D001565:Benzoates; D003432:Cross-Linking Reagents; D006147:Guanine / Q000737:chemistry*; D006801:Humans; D046911:Macromolecular Substances; D012333:RNA, Messenger / Q000737:chemistry; D012337:RNA, Ribosomal, 18S / Q000737:chemistry*; D012346:RNA, Transfer, Amino Acyl / Q000737:chemistry; D012270:Ribosomes / Q000737:chemistry*
D001565:Benzoates; D003432:Cross-Linking Reagents; D046911:Macromolecular Substances; D012333:RNA, Messenger; D012337:RNA, Ribosomal, 18S; D012346:RNA, Transfer, Amino Acyl; D006147:Guanine