title: Promoter elements required for phloem-specific gene expression from the RTBV promoter in rice.
abstract: Previous studies indicated that a DNA fragment comprising nucleotides (nt) -164 to +45 of the RTBV promoter is sufficient to drive phloem-specific expression of a reporter gene in transgenic rice plants. In addition, two potential cis elements, Box I (nt -3 to +5) and Box II (nt -53 to -39) were identified by DNA-protein interaction assays. In this study, the results of further in vivo studies involving mutagenesis of selected DNA sequences and analysis of expression of a reporter gene in transgenic rice plants revealed that, in addition to Box I and Box II, other elements are required for phloem-specific gene expression, among which are a direct repeat (ASL Box, nt -98 to -79) and a GATA motif (nt -143 to -135). All the these elements bind rice nuclear factors specifically, and mutations of the elements were identified that resulted in loss-of-competition in electrophoretic mobility shift assays. A DNA fragment comprising nt -164 to -32, which contains Box II, the ASL Box and the GATA motif, conferred phloem-specific reporter gene expression independent of Box I when fused to a heterologous CaMV 35S minimal promoter and introduced to transgenic rice plants. Studies that introduced point mutations suggested that in the context of the -103 to +45 promoter fragment, Box II and the ASL Box act synergistically to confer tissue-specific gene expression. Similar studies in the -164 to +45 promoter fragment indicated that the -164 to -103 region, which includes the GATA motif, contains sequences that are functionally redundant with those in the -103 to -32 region, including the ASL Box and Box II. It is concluded that these regions act additively to direct phloem-specific gene expression.
authors.affiliation: Department of Cell Biology, Scripps Research Institute, La Jolla, CA 92037, USA.
authors.forename: Y
authors.initials: Y
authors.lastname: Yin
authors.forename: L
authors.initials: L
authors.lastname: Chen
authors.forename: R
authors.initials: R
authors.lastname: Beachy
mesh_terms: D019195:Badnavirus / Q000235:genetics* / Q000502:physiology; D001483:Base Sequence; D017931:DNA Primers; D018506:Gene Expression Regulation, Plant; D008969:Molecular Sequence Data; D016297:Mutagenesis, Site-Directed; D012275:Oryza / Q000235:genetics / Q000502:physiology* / Q000821:virology*; D030821:Plants, Genetically Modified; D010957:Plasmids; D017354:Point Mutation; D011401:Promoter Regions, Genetic; D017384:Sequence Deletion
chemical_list: D017931:DNA Primers