Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. proposal of the family Sphingobacteriaceae fam. nov.
Sixteen heparinase-producing isolates, related to Sphingobacterium heparinum, were grouped into three major clusters by SDS-PAGE and DNA-rRNA hybridizations. Based on a polyphasic approach, it was shown that isolates of two of these clusters and S. heparinum species belong to a new genus for which the name Pedobacter is proposed. The genus consists of Pedobacter heparinus comb. nov. (formerly Sphingobacterium heparinum), which is the type species, Pedobacter piscium comb. nov. (formerly Sphingobacterium piscium), Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. and four as-yet-unnamed DNA hybridization groups. All the previously named taxa can be discriminated by phenotypic features, but have strong overall similarities with representatives of the genus Sphingobacterium and the misclassified species [Flexibacter] canadensis. All these organisms constitute a separate rRNA branch in rRNA superfamily V for which the family Sphingobacteriaceae fam. nov. is proposed.
Steyn
P L
PL
Department Mikrobiologie en Plantpatologie, Universiteit van Pretoria, South Africa.
Segers
P
P
Vancanneyt
M
M
Sandra
P
P
Kersters
K
K
Joubert
J J
JJ
D002965:Classification; D004269:DNA, Bacterial / Q000032:analysis; D005227:Fatty Acids / Q000032:analysis; D006090:Gram-Negative Bacteria / Q000145:classification* / Q000201:enzymology* / Q000235:genetics; D006493:Heparin / Q000378:metabolism*; D019763:Heparin Lyase / Q000378:metabolism*; D008826:Microbial Sensitivity Tests; D009693:Nucleic Acid Hybridization; D010641:Phenotype; D012329:RNA, Bacterial / Q000032:analysis
D004269:DNA, Bacterial; D005227:Fatty Acids; D012329:RNA, Bacterial; D006493:Heparin; D019763:Heparin Lyase