title: Genomic analysis of the Tapasin gene, located close to the TAP loci in the MHC.
abstract: The Tapasin molecule is a member of the immunoglobulin (Ig) superfamily required for the association of TAP transporters and MHC class I heterodimers in the endoplasmic reticulum. In this study, the Tapasin gene was precisely mapped in relation to the MHC. The gene was centromeric of the HLA-DP locus between the HSET and HKE1.5 genes and within 500 kbp of the TAP1 and TAP2 genes. A homologous mouse EST was mapped to a syntenic position on chromosome 17, centromeric of the H-2 K locus. Similarly, the rat Tapasin gene was shown to be in an equivalent location with respect to the RT1.A locus. The localization of Tapasin, TAP, LMP and class I genes within such a short distance of each other on the chromosome implies some regulatory or functional significance. We determined the Tapasin gene sequence for comparison of its structure to that of other Ig superfamily members, such as MHC class I genes. The IgC domain was encoded by a separate exon. However, the positions of the other introns were not characteristic of other Ig superfamily genes, indicating that Tapasin has a distinct phylogeny.
authors.affiliation: Imperial Cancer Research Fund Laboratories, London, GB.
authors.forename: J A
authors.initials: JA
authors.lastname: Herberg
authors.forename: J
authors.initials: J
authors.lastname: Sgouros
authors.forename: T
authors.initials: T
authors.lastname: Jones
authors.forename: J
authors.initials: J
authors.lastname: Copeman
authors.forename: S J
authors.initials: SJ
authors.lastname: Humphray
authors.forename: D
authors.initials: D
authors.lastname: Sheer
authors.forename: P
authors.initials: P
authors.lastname: Cresswell
authors.forename: S
authors.initials: S
authors.lastname: Beck
authors.forename: J
authors.initials: J
authors.lastname: Trowsdale
mesh_terms: D000071181:ATP Binding Cassette Transporter, Subfamily B, Member 2; D018528:ATP-Binding Cassette Transporters / Q000235:genetics*; D000595:Amino Acid Sequence; D000818:Animals; D017920:Antiporters / Q000737:chemistry / Q000235:genetics* / Q000302:isolation & purification; D001483:Base Sequence; D002503:Centromere / Q000737:chemistry / Q000276:immunology; D005091:Exons; D005805:Genes, MHC Class I / Q000276:immunology*; D015395:Histocompatibility Antigens Class I / Q000235:genetics; D006801:Humans; D007136:Immunoglobulins / Q000737:chemistry / Q000235:genetics* / Q000302:isolation & purification; D007438:Introns; D026901:Membrane Transport Proteins; D051379:Mice; D008969:Molecular Sequence Data; D010802:Phylogeny; D051381:Rats
chemical_list: D000071181:ATP Binding Cassette Transporter, Subfamily B, Member 2; D018528:ATP-Binding Cassette Transporters; D017920:Antiporters; D015395:Histocompatibility Antigens Class I; D007136:Immunoglobulins; D026901:Membrane Transport Proteins; C073119:TAP1 protein, human; C486171:Tap1 protein, mouse; C486172:Tap1 protein, rat; C107762:tapasin