Xlandscape: the graphical display of word frequencies in sequences.
BACKGROUND
To provide a graphical interface for the generation, display and manipulation of a sequence landscape that will run on all X-windows-based Unix workstations.


RESULTS
The sequence landscape approach enables the representation of the frequency of occurrence of all query sequence sub-words within a database. The landscape approach can detect tandem and other repeating word motifs, specific sub-words that are over-represented words in a particular database using Markov probability and the preference for sub-words belonging to either one of two databases. All these features aid in the classification of a query sequence. Given the open-text format for sequences and databases, the Xlandscape tool can be applied to a wide range of problems.
Levy
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S
University of Colorado, Boulder 80309-0347, USA.
Compagnoni
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L
Myers
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Stormo
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GD
D000465:Algorithms; D001483:Base Sequence; D003196:Computer Graphics; D004247:DNA; D006801:Humans; D006816:Huntington Disease / Q000235:genetics; D016247:Information Storage and Retrieval; D008969:Molecular Sequence Data; D012091:Repetitive Sequences, Nucleic Acid; D017421:Sequence Analysis; D012984:Software
D004247:DNA