Identification of binding sites for bepridil and trifluoperazine on cardiac troponin C.
The solution structure of cardiac troponin C (cTnC) (Sia, S., Li, M. X., Spyracopoulos, L., Gagne, S. M., Liu, W., Putkey, J. A. & Sykes, B. D. (1997) J. Biol. Chem. 272, 18216-18221) challenges existing structure/function models for this critical regulatory protein. For example, it is clear that the closed conformation of the regulatory N-terminal domain in Ca2+-bound cardiac troponin C (cTnC) presents a much different binding surface for Ca2+-sensitizing compounds than previously thought. We report here the use of Met methyl groups as site-specific structural markers to identify drug binding sites for trifluoperazine and bepridil on cTnC. Drug dependent changes in the NMR heteronuclear single-quantum coherence spectra of [methyl-13C]Met-labeled cTnC indicate that bepridil and trifluoperazine bind to similar sites but only in the presence of Ca2+. There are 3-4 drug binding sites in the N- and C-terminal domains of intact cTnC that exhibit fast exchange on the NMR time scale. Use of a novel spin-labeled phenothiazine and detection of isotope-filtered nuclear Overhauser effects allowed identification of drug binding sites in the shallow hydrophobic cup in the C-terminal domain and on two hydrophobic surfaces on the N-terminal regulatory domain. The data presented here, coupled with our previous study using covalent blocking groups, support a model in which the Ca2+-sensitizing binding site includes Met-45 in helix B of site I, and Met-60 and -80 in helices B and C of the regulatory site II. This subregion in cTnC makes a likely target against which to design new and selective Ca2+-sensitizing compounds.
Kleerekoper
Q
Q
Department of Biochemistry and Molecular Biology, University of Texas Medical School, Houston, Texas 77030, USA.
Liu
W
W
Choi
D
D
Putkey
J A
JA
D000818:Animals; D015764:Bepridil / Q000737:chemistry / Q000378:metabolism*; D001665:Binding Sites; D002118:Calcium / Q000378:metabolism; D006801:Humans; D009206:Myocardium / Q000378:metabolism*; D011485:Protein Binding; D011487:Protein Conformation; D014268:Trifluoperazine / Q000737:chemistry / Q000378:metabolism*; D019209:Troponin C / Q000737:chemistry / Q000378:metabolism*
D019209:Troponin C; D014268:Trifluoperazine; D015764:Bepridil; D002118:Calcium