Reactions of alternate substrates demonstrate stereoelectronic control of reactivity in dialkylglycine decarboxylase.
Kinetic and product analyses of the reactions of dialkylglycine decarboxylase with several alternative substrates are presented. Rate constants for the reactions of amino and keto acids of several substrates decrease logarithmically with increasing side-chain size. Conversely, kcat for L-amino acid decarboxylation increases with side-chain size. These and other data confirm a proposed model for three binding subsites in the active site. In this model, bond making and breaking in both the decarboxylation and transamination half-reactions occurs at the "A" subsite, which maintains the scissile bond aligned with the p orbitals of the conjugated aldimine and thus maximizes stereoelectronic effects. This strongly supports the proposal by Dunathan (Proc. Natl. Acad. Sci. U.S.A. 55, 712-716) that PLP-dependent enzymes can largely control reaction specificity by specific orientation about C alpha in the external aldimine intermediate. The "B" subsite can accept either an alkyl or a carboxylate group, while the "C" subsite accepts only small alkyl groups. This model predicts the existence of nonproductive binding modes for amino acids, which is proposed to be the ultimate origin of the kcat increase with side-chain size for L-amino acid decarboxylation. The specificity of the 2-aminoisobutyrate decarboxylation half-reaction toward oxidative decarboxylation is very high (< 1 in 10(5) turnovers yields nonoxidative decarboxylation). The origin of this specificity is explored with the reactions of amino- and methylaminomalonate. These substrates exhibit high yields of nonoxidative decarboxylation, providing support for a model in which the interaction between a carboxylate group in the B subsite and Arg406 is a prerequisite to proton donation to and removal from C alpha.
Sun
S
S
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Zabinski
R F
RF
Toney
M D
MD
D000410:Alanine Transaminase / Q000378:metabolism; D000596:Amino Acids / Q000378:metabolism; D000597:Amino Acids, Branched-Chain / Q000378:metabolism; D016956:Burkholderia cepacia / Q000201:enzymology*; D002262:Carboxy-Lyases / Q000378:metabolism*; D003653:Decarboxylation; D004579:Electron Transport; D004789:Enzyme Activation; D008956:Models, Chemical; D010084:Oxidation-Reduction; D011732:Pyridoxal Phosphate / Q000378:metabolism; D013237:Stereoisomerism; D013379:Substrate Specificity
D000596:Amino Acids; D000597:Amino Acids, Branched-Chain; D011732:Pyridoxal Phosphate; D000410:Alanine Transaminase; D002262:Carboxy-Lyases; C063519:2,2-dialkylglycine decarboxylase