title: Archaeal translation initiation revisited: the initiation factor 2 and eukaryotic initiation factor 2B alpha-beta-delta subunit families.
abstract: As the amount of available sequence data increases, it becomes apparent that our understanding of translation initiation is far from comprehensive and that prior conclusions concerning the origin of the process are wrong. Contrary to earlier conclusions, key elements of translation initiation originated at the Universal Ancestor stage, for homologous counterparts exist in all three primary taxa. Herein, we explore the evolutionary relationships among the components of bacterial initiation factor 2 (IF-2) and eukaryotic IF-2 (eIF-2)/eIF-2B, i.e., the initiation factors involved in introducing the initiator tRNA into the translation mechanism and performing the first step in the peptide chain elongation cycle. All Archaea appear to posses a fully functional eIF-2 molecule, but they lack the associated GTP recycling function, eIF-2B (a five-subunit molecule). Yet, the Archaea do posses members of the gene family defined by the (related) eIF-2B subunits alpha, beta, and delta, although these are not specifically related to any of the three eukaryotic subunits. Additional members of this family also occur in some (but by no means all) Bacteria and even in some eukaryotes. The functional significance of the other members of this family is unclear and requires experimental resolution. Similarly, the occurrence of bacterial IF-2-like molecules in all Archaea and in some eukaryotes further complicates the picture of translation initiation. Overall, these data lend further support to the suggestion that the rudiments of translation initiation were present at the Universal Ancestor stage.
authors.affiliation: Department of Microbiology, University of Illinois at Urbana-Champaign, B103 Chemical and Life Sciences, MC 110, 407 S. Goodwin, Urbana, IL 61801, USA. nikos@darwin.life.uiuc.edu
authors.forename: N C
authors.initials: NC
authors.lastname: Kyrpides
authors.forename: C R
authors.initials: CR
authors.lastname: Woese
mesh_terms: D000595:Amino Acid Sequence; D001105:Archaea / Q000235:genetics*; D001419:Bacteria / Q000235:genetics*; D019143:Evolution, Molecular; D020662:Guanine Nucleotide Exchange Factors; D008969:Molecular Sequence Data; D010448:Peptide Initiation Factors / Q000235:genetics*; D010802:Phylogeny; D039881:Prokaryotic Initiation Factor-2; D011506:Proteins / Q000235:genetics*; D016415:Sequence Alignment
chemical_list: D020662:Guanine Nucleotide Exchange Factors; D010448:Peptide Initiation Factors; D039881:Prokaryotic Initiation Factor-2; D011506:Proteins