title: Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA.
abstract: Molecular beacon probes can be employed in a NASBA amplicon detection system to generate a specific fluorescent signal concomitantly with amplification. A molecular beacon, designed to hybridize within the target sequence, was introduced into NASBA reactions that amplify the genomic RNA of potato leafroll virus (PLRV). During amplification, the probe anneals to the antisense RNA amplicon generated by NASBA, producing a specific fluorescent signal that can be monitored in real-time. The assay is rapid, sensitive and specific. As RNA amplification and detection can be carried out in unopened vessels, it minimizes the risk of carry-over contaminations. Robustness has been verified on real-world samples. This homogeneous assay, called AmpliDet RNA, is a significant improvement over current detection methods for NASBA amplicons and is suitable for one-tube applications ranging from high-throughput diagnostics to in vivo studies of biological activities.
authors.affiliation: DLO Research Institute for Plant Protection (IPO-DLO), PO Box 9060, 6700 GW Wageningen, The Netherlands. leone@ipo.dlo.nl
authors.forename: G
authors.initials: G
authors.lastname: Leone
authors.forename: H
authors.initials: H
authors.lastname: van Schijndel
authors.forename: B
authors.initials: B
authors.lastname: van Gemen
authors.forename: F R
authors.initials: FR
authors.lastname: Kramer
authors.forename: C D
authors.initials: CD
authors.lastname: Schoen
mesh_terms: D001483:Base Sequence; D005456:Fluorescent Dyes; D017793:Luteovirus / Q000235:genetics*; D008969:Molecular Sequence Data; D021141:Nucleic Acid Amplification Techniques; D009691:Nucleic Acid Denaturation; D015345:Oligonucleotide Probes; D012367:RNA, Viral / Q000032:analysis*
chemical_list: D005456:Fluorescent Dyes; D015345:Oligonucleotide Probes; D012367:RNA, Viral