title: An NMR investigation of the conformational effect of nitroxide spin labels on Ala-rich helical peptides.
abstract: Nitroxide spin labels, in conjunction with electron spin resonance (ESR) experiments, are extensively employed to probe the structure and dynamics of biomolecules. One of the most ubiquitous spin labeling reagents is the methanethiosulfonate spin label which attaches a spin label selectively to Cys residues via a disulfide bond (Cys-SL). However, the actual effect of the nitroxide spin label upon the conformation of the peptide or protein cannot be unambiguously determined by ESR. In this study, a series of 16-residue Ala-rich helical peptides was characterized by nuclear magnetic resonance techniques. The C alpha H chemical shift analysis, NOEs, and 3JNH alpha coupling constants for peptides with no Cys, free Cys, and Cys-SL (with the N-O group reduced) were compared. These results indicate that while replacement of an Ala with a Cys residue causes a loss of overall helical structure, the Cys-SL residue is helix supporting, as would be expected for a non-beta-branched aliphatic amino acid. Thus, the Cys-SL residue does not perturb helical structure and, instead, exhibits helix-stabilizing characteristics similar to that found for Ala, Met, and Leu.
authors.affiliation: Department of Chemistry and Biochemistry, University of California, Santa Cruz 95064, USA.
authors.forename: K A
authors.initials: KA
authors.lastname: Bolin
authors.forename: P
authors.initials: P
authors.lastname: Hanson
authors.forename: S J
authors.initials: SJ
authors.lastname: Wright
authors.forename: G L
authors.initials: GL
authors.lastname: Millhauser
mesh_terms: D000409:Alanine / Q000032:analysis*; D002942:Circular Dichroism; D003497:Cyclic N-Oxides; D003545:Cysteine / Q000032:analysis; D009682:Magnetic Resonance Spectroscopy; D008698:Mesylates; D010455:Peptides / Q000032:analysis*; D017433:Protein Structure, Secondary; D013113:Spin Labels
chemical_list: D003497:Cyclic N-Oxides; D008698:Mesylates; D010455:Peptides; D013113:Spin Labels; C034248:(1-oxyl-2,2,5,5-tetramethylpyrroline-3-methyl)methanethiosulfonate; D003545:Cysteine; D000409:Alanine