title: Catalytic mechanism of aldose reductase studied by the combined potentials of quantum mechanics and molecular mechanics.
abstract: The catalytic reduction of D-glyceraldehyde to glycerol by aldose reductase has been investigated with the combined potentials of quantum mechanics (QM) and molecular mechanics (MM) to resolve the question of whether Tyr48 or His110 serves as the proton donor during catalysis. Site directed mutagenesis studies favor Tyr48 as the proton donor while the presence of a water channel linking the N delta 1 of His110 to the bulk solvent suggests that His110 is the proton donor. Utilizing the combined potentials of QM and MM, the binding mode of substrate D-glyceraldehyde was investigated by optimizing the local geometry of Asp43, Lys77, Tyr48, His110 and NADPH at the active site of aldose reductase. Reaction pathways for the reduction of D-glyceraldehyde to glycerol were then constructed by treating both Tyr48 and His110 as proton donors. Comparison of energetics obtained from the reaction pathways suggests His110 to be the proton donor. Based on these findings, a reduction mechanism of D-glyceraldehyde to glycerol is described.
authors.affiliation: National Eye Institute, National Institutes of Health, Bethesda, MD 20892, USA. yongslee@helix.nih.gov
authors.forename: Y S
authors.initials: YS
authors.lastname: Lee
authors.forename: M
authors.initials: M
authors.lastname: Hodoscek
authors.forename: B R
authors.initials: BR
authors.lastname: Brooks
authors.forename: P F
authors.initials: PF
authors.lastname: Kador
mesh_terms: D000449:Aldehyde Reductase / Q000737:chemistry / Q000378:metabolism*; D001665:Binding Sites; D002384:Catalysis; D055598:Chemical Phenomena; D002627:Chemistry, Physical; D004734:Energy Metabolism; D006801:Humans; D008958:Models, Molecular; D008968:Molecular Conformation; D011522:Protons; D011789:Quantum Theory
chemical_list: D011522:Protons; D000449:Aldehyde Reductase