title: Transcription activation at Class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase alpha subunit.
abstract: Many transcription factors, including the Escherichia coli cyclic AMP receptor protein (CRP), act by making direct contacts with RNA polymerase. At Class II CRP-dependent promoters, CRP activates transcription by making two such contacts: (i) an interaction with the RNA polymerase alpha subunit C-terminal domain (alphaCTD) that facilitates initial binding of RNA polymerase to promoter DNA; and (ii) an interaction with the RNA polymerase alpha subunit N-terminal domain that facilitates subsequent promoter opening. We have used random mutagenesis and alanine scanning to identify determinants within alphaCTD for transcription activation at a Class II CRP-dependent promoter. Our results indicate that Class II CRP-dependent transcription requires the side chains of residues 265, 271, 285-288 and 317. Residues 285-288 and 317 comprise a discrete 20x10 A surface on alphaCTD, and substitutions within this determinant reduce or eliminate cooperative interactions between alpha subunits and CRP, but do not affect DNA binding by alpha subunits. We propose that, in the ternary complex of RNA polymerase, CRP and a Class II CRP-dependent promoter, this determinant in alphaCTD interacts directly with CRP, and is distinct from and on the opposite face to the proposed determinant for alphaCTD-CRP interaction in Class I CRP-dependent transcription.
authors.affiliation: School of Biochemistry, University of Birmingham, Birmingham, UK. N.J.Savery@bham.ac.uk
authors.forename: N J
authors.initials: NJ
authors.lastname: Savery
authors.forename: G S
authors.initials: GS
authors.lastname: Lloyd
authors.forename: M
authors.initials: M
authors.lastname: Kainz
authors.forename: T
authors.initials: T
authors.lastname: Gaal
authors.forename: W
authors.initials: W
authors.lastname: Ross
authors.forename: R H
authors.initials: RH
authors.lastname: Ebright
authors.forename: R L
authors.initials: RL
authors.lastname: Gourse
authors.forename: S J
authors.initials: SJ
authors.lastname: Busby
mesh_terms: D000409:Alanine / Q000378:metabolism; D002373:Cyclic AMP Receptor Protein / Q000378:metabolism*; D012321:DNA-Directed RNA Polymerases / Q000235:genetics*; D004926:Escherichia coli / Q000235:genetics; D008958:Models, Molecular; D016296:Mutagenesis; D010957:Plasmids / Q000235:genetics; D011401:Promoter Regions, Genetic / Q000235:genetics*; D011487:Protein Conformation; D015533:Transcriptional Activation
chemical_list: D002373:Cyclic AMP Receptor Protein; D012321:DNA-Directed RNA Polymerases; D000409:Alanine