title: Quantitative reverse transcription strand displacement amplification: quantitation of nucleic acids using an isothermal amplification technique.
abstract: Recent advances in nucleic acid amplification techniques have allowed for quantitation of viral nucleic acid levels in clinical specimens. The most prevalent testing is carried out for HIV viral load. Strand displacement amplification (SDA) is an isothermal DNA amplification system utilizing a restriction enzyme and a DNA polymerase with strand displacement properties. SDA was adapted for quantitative RNA amplification (QRT-SDA) of an HIV gag sequence by including AMV reverse transcriptase, a quantitative control sequence, and 32P-labeled detector oligonucleotides for the HIV and the control sequences. We have also improved the amplification efficiency by including the single-strand binding protein from gene 32 of T4 bacteriophage (T4gp32) to enhance strand displacement replication. In a preliminary analytical demonstration of the technique, RT-SDA was quantitative to within twofold over a range of 500-500,000 transcripts that were generated from a plasmid bearing an HIV gag sequence. QRT-SDA potentially represents a convenient alternative for viral load testing in a clinical setting.
authors.affiliation: Department of Molecular Biology, Becton Dickinson Research Center, Research Triangle Park, North Carolina 27709, USA. nycz@bdrc.bd.com
authors.forename: C M
authors.initials: CM
authors.lastname: Nycz
authors.forename: C H
authors.initials: CH
authors.lastname: Dean
authors.forename: P D
authors.initials: PD
authors.lastname: Haaland
authors.forename: C A
authors.initials: CA
authors.lastname: Spargo
authors.forename: G T
authors.initials: GT
authors.lastname: Walker
mesh_terms: D001483:Base Sequence; D017931:DNA Primers; D015683:Gene Products, gag / Q000235:genetics; D006678:HIV / Q000235:genetics / Q000302:isolation & purification; D021141:Nucleic Acid Amplification Techniques; D009696:Nucleic Acids / Q000032:analysis* / Q000235:genetics; D012194:RNA-Directed DNA Polymerase / Q000737:chemistry; D019562:Viral Load
chemical_list: D017931:DNA Primers; D015683:Gene Products, gag; D009696:Nucleic Acids; D012194:RNA-Directed DNA Polymerase