title: Identification and sequence analysis of a 27-kilobase chromosomal fragment containing a Salmonella pathogenicity island located at 92 minutes on the chromosome map of Salmonella enterica serovar typhimurium LT2.
abstract: Using a genomic approach, we have identified a new Salmonella pathogenicity island, SPI-4, which is the fourth Salmonella pathogenicity island to be identified. SPI-4 was located at 92 min on the chromosome map and was flanked by the ssb and soxSR loci. The DNA sequence covering the entire SPI-4 and both boundaries was determined. The size of SPI-4 was about 25 kb and it contains 18 putative open reading frames (ORFs). Three of these ORFs encode proteins that have significant homology with proteins involved in toxin secretion. Another five ORFs encode proteins that have significant homology with hypothetical proteins from Synechocystis sp. strain PCC6803 or Acinetobacter calcoaceticus. The rest of the ORFs encode novel proteins, one of which has five membrane-spanning domains. SPI-4 is likely to carry a type I secretion system involved in toxin secretion. Furthermore, a previously identified locus (ims98), which is required for intramacrophage survival, was also mapped within the SPI-4 region. These findings suggested that SPI-4 is needed for intramacrophage survival.
authors.affiliation: Molecular Biosciences, Pacific Northwest National Laboratory, Richland, Washington 99352, USA. kk.wong@pnl.gov
authors.forename: K K
authors.initials: KK
authors.lastname: Wong
authors.forename: M
authors.initials: M
authors.lastname: McClelland
authors.forename: L C
authors.initials: LC
authors.lastname: Stillwell
authors.forename: E C
authors.initials: EC
authors.lastname: Sisk
authors.forename: S J
authors.initials: SJ
authors.lastname: Thurston
authors.forename: J D
authors.initials: JD
authors.lastname: Saffer
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D002874:Chromosome Mapping; D005798:Genes, Bacterial; D008969:Molecular Sequence Data; D005810:Multigene Family; D016366:Open Reading Frames; D012475:Salmonella / Q000472:pathogenicity*; D019779:Salmonella enterica / Q000235:genetics*; D014774:Virulence / Q000235:genetics