Excluded volume in the configurational distribution of a strongly-denatured protein.
The configurational distribution of phosphoglycerate kinase (PGK) strongly-denatured in 4 M guanidine hydrochloride solution is investigated using small-angle neutron scattering (SANS) and Monte Carlo computer simulation. It is shown that the experimental scattering profile can be represented by a random flexible chain of spheres of excess scattering density with excluded volume interactions, the best agreement being achieved when partial sphere intersection is allowed. The radius of gyration of the chain increases by a factor of 4 on denaturation, whereas the average length of segments approximately 5 residues long increases by only approximately 10%, consistent with a picture in which the large expansion on denaturation originates primarily from increased long-range flexibility of the polypeptide chain. The results provide a description of the chain statistics from which the construction of starting points for simulation studies of folding of the protein can be envisaged.
Petrescu
A J
AJ
Institute of Biochemistry, Bucharest, Romania.
Receveur
V
V
Calmettes
P
P
Durand
D
D
Smith
J C
JC
D003198:Computer Simulation; D019791:Guanidine; D008433:Mathematics; D009010:Monte Carlo Method; D009502:Neutrons; D010735:Phosphoglycerate Kinase / Q000737:chemistry*; D011489:Protein Denaturation; D012542:Scattering, Radiation; D012996:Solutions
D012996:Solutions; D010735:Phosphoglycerate Kinase; D019791:Guanidine