title: Site-specific confocal fluorescence imaging of biological microstructures in a turbid medium.
abstract: Normally transparent biological structures in a turbid medium are imaged using a laser confocal microscope and multiwavelength site-specific fluorescence labelling. The spatial filtering capability of the detector pinhole in the confocal microscope limits the number of scattered fluorescent photons that reach the photodetector. Simultaneous application of different fluorescent markers on the same sample site minimizes photobleaching by reducing the excitation time for each marker. A high-contrast grey-level image is also produced by summing confocal images of the same site taken at different fluorescence wavelengths. Monte Carlo simulations are performed to obtain the quantitative behaviour of confocal fluorescence imaging in turbid media. Confocal images of the following samples were also obtained: (i) 15 microm diameter fluorescent spheres placed 1.16 mm deep beneath an aqueous suspension of 0.0823 microm diameter polystyrene latex spheres, and (ii) hindbrain of a whole-mount mouse embryo (age 10 days) that was stained to fluoresce at 515 nm and 580 nm peak wavelengths. Expression of RNA transcripts of a gene within the embryo hindbrain was detected by a fluorescence-based whole-mount in situ hybridization procedure that we recently tested.
authors.affiliation: National Institute of Physics, University of the Philippines, Diliman, Quezon City. csaloma@nip.upd.edu.ph
authors.forename: C
authors.initials: C
authors.lastname: Saloma
authors.forename: C
authors.initials: C
authors.lastname: Palmes-Saloma
authors.forename: H
authors.initials: H
authors.lastname: Kondoh
mesh_terms: D000818:Animals; D055592:Biophysical Phenomena; D001703:Biophysics; D015870:Gene Expression; D017404:In Situ Hybridization, Fluorescence; D051379:Mice; D018613:Microscopy, Confocal / Q000295:instrumentation / Q000379:methods*; D008856:Microscopy, Fluorescence / Q000295:instrumentation / Q000379:methods* / Q000706:statistics & numerical data; D008863:Microspheres; D009010:Monte Carlo Method; D017785:Photons; D012313:RNA / Q000235:genetics / Q000378:metabolism; D012249:Rhombencephalon / Q000196:embryology / Q000378:metabolism; D012542:Scattering, Radiation; D012985:Software Design
chemical_list: D012313:RNA