A method for motion compensation of a moving nematode Caenorhabditis elegans and its application to frequency analysis of pharyngeal pulsation.
A new sequential image processing method for motion compensation of a moving object with stringy shape has been developed for estimating the pharyngeal pulsation of the nematode Caenorhabditis elegans under several environmental conditions. The method is based on the pixel data transfer on a new image frame while changing the boundary shape and the position but preserving the conformation of the inner structure of an object. All digitized image frames of C. elegans were first converted to motion-compensated images to arrange the pulsation site in the same region of the every transformed frame. The pulsation site was then automatically detected by determining the pixels where the temporal brightness variation was much larger than that of the other pixels. Finally, the pulsation frequency was determined by the Fourier analysis. The validity of our method has been confirmed by analyzing various test data, and the method has been applied for detecting the pharyngeal pulsation frequencies of C. elegans on some environmental conditions, i.e. feed bacteria-free/rich, doping of nerve inactivating ethyl-alcohol and nerve stimulant neurochemical substance of serotonin. The motion compensation method automatically provided reasonable pulsation frequencies which were found to be comparable to those obtained by manual counting. Thus the method is useful for systematic investigations on the variation of pharyngeal pulsation associated with the activity change of the nervous system in environments.
Biswas
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SN
Department of Electrical and Electronic Engineering, Faculty of Engineering, Yamaguchi University, Ube, Japan.
Murata
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T
Ebina
Y
Y
Okada
H
H
Miki
T
T
D000465:Algorithms; D000818:Animals; D017173:Caenorhabditis elegans / Q000502:physiology*; D000431:Ethanol / Q000494:pharmacology; D007091:Image Processing, Computer-Assisted; D018715:Microscopy, Video; D010614:Pharynx / Q000502:physiology*; D012701:Serotonin / Q000494:pharmacology
D012701:Serotonin; D000431:Ethanol