title: Three electronic state model of the primary phototransformation of bacteriorhodopsin.
abstract: The primary all-trans --> 13-cis photoisomerization of retinal in bacteriorhodopsin has been investigated by means of quantum chemical and combined classical/quantum mechanical simulations employing the density matrix evolution method. Ab initio calculations on an analog of a protonated Schiff base of retinal in vacuo reveal two excited states S1 and S2, the potential surfaces of which intersect along the reaction coordinate through an avoided crossing, and then exhibit a second, weakly avoided, crossing or a conical intersection with the ground state surface. The dynamics governed by the three potential surfaces, scaled to match the in situ level spacings and represented through analytical functions, are described by a combined classical/quantum mechanical simulation. For a choice of nonadiabatic coupling constants close to the quantum chemistry calculation results, the simulations reproduce the observed photoisomerization quantum yield and predict the time needed to pass the avoided crossing region between S1 and S2 states at tau1 = 330 fs and the S1 --> ground state crossing at tau2 = 460 fs after light absorption. The first crossing follows after a 30 degrees torsion on a flat S1 surface, and the second crossing follows after a rapid torsion by a further 60 degrees. tau1 matches the observed fluorescence lifetime of S1. Adjusting the three energy levels to the spectral shift of D85N and D212N mutants of bacteriorhodospin changes the crossing region of S1 and S2 and leads to an increase in tau1 by factors 17 and 10, respectively, in qualitative agreement with the observed increase in fluorescent lifetimes.
authors.affiliation: Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
authors.forename: W
authors.initials: W
authors.lastname: Humphrey
authors.forename: H
authors.initials: H
authors.lastname: Lu
authors.forename: I
authors.initials: I
authors.lastname: Logunov
authors.forename: H J
authors.initials: HJ
authors.lastname: Werner
authors.forename: K
authors.initials: K
authors.lastname: Schulten
mesh_terms: D019943:Amino Acid Substitution; D001436:Bacteriorhodopsins / Q000737:chemistry* / Q000378:metabolism* / Q000528:radiation effects; D001665:Binding Sites; D004563:Electrochemistry; D008958:Models, Molecular; D017354:Point Mutation; D017433:Protein Structure, Secondary; D011789:Quantum Theory; D012172:Retinaldehyde / Q000378:metabolism*; D013237:Stereoisomerism
chemical_list: D001436:Bacteriorhodopsins; D012172:Retinaldehyde