JOY: protein sequence-structure representation and analysis.
BACKGROUND
JOY is a program to annotate protein sequence alignments with three-dimensional (3D) structural features. It was developed to display 3D structural information in a sequence alignment and to help understand the conservation of amino acids in their specific local environments.


RESULTS
: The JOY representation now constitutes an essential part of the two databases of protein structure alignments: HOMSTRAD (http://www-cryst.bioc.cam.ac.uk/homstrad ) and CAMPASS (http://www-cryst.bioc.cam.ac. uk/campass). It has also been successfully used for identifying distant evolutionary relationships.


BACKGROUND
The program can be obtained via anonymous ftp from torsa.bioc.cam.ac.uk from the directory /pub/joy/. The address for the JOY server is http://www-cryst.bioc.cam.ac.uk/cgi-bin/joy.cgi.


BACKGROUND
kenji@cryst.bioc.cam.ac.uk
Mizuguchi
K
K
Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK. kenji@cryst.bioc.cam.ac.uk
Deane
C M
CM
Blundell
T L
TL
Johnson
M S
MS
Overington
J P
JP
D000595:Amino Acid Sequence; D006860:Hydrogen Bonding; D008969:Molecular Sequence Data; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D011506:Proteins / Q000737:chemistry*; D016415:Sequence Alignment; D012984:Software
D011506:Proteins