Modelling a 3D structure for EgDf1 from Echinococcus granulosus: putative epitopes, phosphorylation motifs and ligand.
EgDf1 is a developmentally regulated protein from the parasite Echinococcus granulosus related to a family of hydrophobic ligand binding proteins. This protein could play a crucial role during the parasite life cycle development since this organism is unable to synthetize most of their own lipids de novo. Furthermore, it has been shown that two related protein from other parasitic platyhelminths (Fh15 from Fasciola hepatica and Sm14 from Schistosoma mansoni) are able to confer protective inmunity against experimental infection in animal models. A three-dimensional structure would help establishing structure/function relationships on a knowledge based manner. 3D structures for EgDf1 protein were modelled by using myelin P2 (mP2) and intestine fatty acid binding protein (I-FABP) as templates. Molecular dynamics techniques were used to validate the models. Template mP2 yielded the best 3D structure for EgDf1. Palmitic and oleic acids were docked inside EgDf1. The present theoretical results suggest definite location in the secondary structure of the epitopic regions, consensus phosphorylation motifs and oleic acid as a good ligand candidate to EgDf1. This protein might well be involved in the process of supplying hydrophobic metabolites for membrane biosynthesis and for signaling pathways.
Paulino
M
M
Department of Quantum Chemistry, Faculty of Chemistry, Universidad de la República, Uruguay, Sweden.
Esteves
A
A
Vega
M
M
Tabares
G
G
Ehrlich
R
R
Tapia
O
O
D000595:Amino Acid Sequence; D000818:Animals; D000947:Antigens, Helminth / Q000737:chemistry; D001665:Binding Sites; D003198:Computer Simulation; D004446:Echinococcus / Q000737:chemistry* / Q000254:growth & development / Q000276:immunology; D000939:Epitopes / Q000737:chemistry; D015801:Helminth Proteins / Q000737:chemistry* / Q000276:immunology; D008024:Ligands; D046911:Macromolecular Substances; D008958:Models, Molecular; D010766:Phosphorylation; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D013816:Thermodynamics
D000947:Antigens, Helminth; D000939:Epitopes; D015801:Helminth Proteins; D008024:Ligands; D046911:Macromolecular Substances