Polymorphism of TAPASIN and its linkage disequilibria with HLA class II genes in the Japanese population.
Tapasin plays an important role in HLA class I assembly. The gene has been mapped on the human MHC region. We identified two alleles of TAPASIN in the Japanese population and analyzed the association of the alleles with HLA-DPB1, -DQB1 and -DRB1 alleles. The allele frequencies of TAPASIN*01 and *02 were estimated to be 0.37 and 0.63, respectively, in the Japanese population. TAPASIN showed strong linkage disequilibrium with the HLA-DPB1 locus. Several frequent four-locus haplotypes were identified, including DRB1*0901-DQB1*0303-DPB1*0501-TAPASIN*02, DRB1*0901-DQB1*0303-DPB1*0201-TAPASIN*02 and DRB1*1302-DQB1*0604-DPB1*0401-TAPASIN*02.
Furukawa
H
H
Department of Research, Japanese Red Cross Central Blood Center, Tokyo, Japan.
Kashiwase
K
K
Yabe
T
T
Ishikawa
Y
Y
Akaza
T
T
Tadokoro
K
K
Tohma
S
S
Inoue
T
T
Tokunaga
K
K
Yamamoto
K
K
Juji
T
T
D017920:Antiporters / Q000235:genetics*; D044466:Asian People / Q000235:genetics*; D006680:HLA Antigens / Q000235:genetics*; D015395:Histocompatibility Antigens Class I / Q000235:genetics*; D000949:Histocompatibility Antigens Class II / Q000235:genetics*; D006801:Humans; D007136:Immunoglobulins / Q000235:genetics*; D007564:Japan / Q000453:epidemiology; D015810:Linkage Disequilibrium / Q000235:genetics*; D026901:Membrane Transport Proteins; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction; D011110:Polymorphism, Genetic / Q000235:genetics*; D012150:Polymorphism, Restriction Fragment Length; D011897:Random Allocation
D017920:Antiporters; D006680:HLA Antigens; D015395:Histocompatibility Antigens Class I; D000949:Histocompatibility Antigens Class II; D007136:Immunoglobulins; D026901:Membrane Transport Proteins; C107762:tapasin