title: Involvement of DNA methylation in binding of a highly repetitive DNA component to nuclear scaffold proteins from rat liver.
abstract: Experimental reduction of the amount of CpG methylation in a highly repetitive DNA component was achieved by growth of Ac2F cells in the presence of 5-aza-2'-deoxycytidine or procainamide, as judged by the results of methyl-sensitive restriction endonuclease digestion and colony hybridization. Modification of genomic DNA with these DNA methylation inhibitors increased the release of 370-bp highly repetitive DNA from rat chromosomal DNA by HindIII digestion. This result indicated that highly repetitive DNA components in the nuclear scaffold fraction are hypermethylated. On the other hand, methylated DNA was used for southwestern analysis to investigate the protein(s) which bind specifically to the DNA in the nuclear scaffold fraction. The introduction of additional methylated cytosines within a highly repetitive DNA component affected the binding of DNA to the nuclear scaffold proteins. Thus, cytosine methylation may be involved in the regulation of gene expression and construction of the higher-order structure of chromatin.
authors.affiliation: Molecular Genetics Research Center, Toyama Medical & Pharmaceutical University, 2630 Sugitani, Toyama, 930-0194, Japan. hibi1958@ms.toyama-mpu.ac.jp
authors.forename: Y
authors.initials: Y
authors.lastname: Hibino
authors.forename: H
authors.initials: H
authors.lastname: Ohzeki
authors.forename: N
authors.initials: N
authors.lastname: Hirose
authors.forename: Y
authors.initials: Y
authors.lastname: Morita
authors.forename: N
authors.initials: N
authors.lastname: Sugano
mesh_terms: D000818:Animals; D034961:Antigens, Nuclear; D001374:Azacitidine / Q000031:analogs & derivatives / Q000494:pharmacology; D002460:Cell Line; D018899:CpG Islands; D004247:DNA / Q000235:genetics* / Q000378:metabolism*; D019175:DNA Methylation / Q000187:drug effects; D004268:DNA-Binding Proteins / Q000378:metabolism*; D000077209:Decitabine; D005786:Gene Expression Regulation; D008099:Liver / Q000187:drug effects / Q000378:metabolism*; D009687:Nuclear Proteins / Q000378:metabolism*; D011342:Procainamide / Q000494:pharmacology; D011485:Protein Binding; D051381:Rats; D012091:Repetitive Sequences, Nucleic Acid
chemical_list: D034961:Antigens, Nuclear; D004268:DNA-Binding Proteins; D009687:Nuclear Proteins; D000077209:Decitabine; D004247:DNA; D011342:Procainamide; D001374:Azacitidine