O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins.
O-GLYCBASE is a database of glycoproteins with O-linked glycosylation sites. Entries with at least one experimentally verified O-glycosylation site have been compiled from protein sequence databases and literature. Each entry contains information about the glycan involved, the species, sequence, a literature reference and http-linked cross-references to other databases. Version 4.0 contains 179 protein entries, an approximate 15% increase over the last version. Sequence logos representing the acceptor specificity patterns for GalNAc, GlcNAc, mannosyl and xylosyl transferases are shown. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu.dk/databases/OGLYCBASE/
Gupta
R
R
Center for Biological Sequence Analysis, The Technical University of Denmark, DK-2800 Lyngby, Denmark. ramneek@cbs.dtu.dk
Birch
H
H
Rapacki
K
K
Brunak
S
S
Hansen
J E
JE
D000116:Acetylgalactosamine / Q000378:metabolism; D000117:Acetylglucosamine / Q000378:metabolism; D000595:Amino Acid Sequence; D001234:Aspergillus niger; D016208:Databases, Factual; D006023:Glycoproteins / Q000737:chemistry* / Q000378:metabolism*; D006031:Glycosylation; D016247:Information Storage and Retrieval; D020407:Internet; D008358:Mannose / Q000378:metabolism; D011499:Protein Processing, Post-Translational; D014994:Xylose / Q000378:metabolism
D006023:Glycoproteins; D014994:Xylose; D000116:Acetylgalactosamine; D008358:Mannose; D000117:Acetylglucosamine