Sequence diversity of the oprI gene, coding for major outer membrane lipoprotein I, among rRNA group I pseudomonads.
The sequence of oprI, the gene coding for the major outer membrane lipoprotein I, was determined by PCR sequencing for representatives of 17 species of rRNA group I pseudomonads, with a special emphasis on Pseudomonas aeruginosa and Pseudomonas fluorescens. Within the P. aeruginosa species, oprI sequences for 25 independent isolates were found to be identical, except for one silent substitution at position 96. The oprI sequences diverged more for the other rRNA group I pseudomonads (85 to 91% similarity with P. aeruginosa oprI). An accumulation of silent and also (but to a much lesser extent) nonsilent substitutions in the different sequences was found. A clustering according to the respective presence and/or positions of the HaeIII, PvuII, and SphI sites could also be obtained. A sequence cluster analysis showed a rather widespread distribution of P. fluorescens isolates. All other rRNA group I pseudomonads clustered in a manner that was in agreement with other studies, showing that the oprI gene can be useful as a complementary phylogenetic marker for classification of rRNA group I pseudomonads.
De Vos
D
D
Laboratory of Microbial Interactions, Department of Immunology, Parasitology, and Ultrastructure, Flanders Interuniversity Institute of Biotechnology, Vrije Universiteit Brussel, B-1640 Sint Genesius Rode, Belgium.
Bouton
C
C
Sarniguet
A
A
De Vos
P
P
Vauterin
M
M
Cornelis
P
P
D001426:Bacterial Proteins / Q000235:genetics*; D001483:Base Sequence; D001665:Binding Sites; D004262:DNA Restriction Enzymes; D004269:DNA, Bacterial; D005798:Genes, Bacterial; D008074:Lipoproteins / Q000235:genetics*; D008969:Molecular Sequence Data; D011550:Pseudomonas aeruginosa / Q000145:classification / Q000235:genetics*; D011551:Pseudomonas fluorescens / Q000145:classification / Q000235:genetics*; D012335:RNA, Ribosomal / Q000235:genetics
D001426:Bacterial Proteins; D004269:DNA, Bacterial; D008074:Lipoproteins; D012335:RNA, Ribosomal; C060507:outer membrane lipoprotein I, Bacteria; D004262:DNA Restriction Enzymes