Mapping four genes from human chromosome 4 to porcine chromosome 8 further develops the comparative map for an economically important chromosome of the swine genome.
Because porcine chromosome (SSC) 8 has become the focal point of many efforts aimed at identifying quantitative trait loci affecting ovulation rate, genes distributed across human chromosome (HSA) 4 were physically mapped in the pig. A more refined comparative map of this region for these two species was produced. In this study, four genes were selected based on their location in the human genome, the availability of nucleotide sequence and their genomic organization. The genes selected were fibroblast growth factor basic (FGF2; HSA 4q25-27), gonadotropin releasing hormone receptor (GNRHR; HSA 4q13), phosphodiesterase 6 B (PDE6B; HSA 4p16.3) and aminopeptidase S (PEPS; HSA 4p11-q12). Genomic libraries were screened via PCR and clones were physically assigned using fluorescence in situ hybridization (FISH). These four genes from HSA 4 were physically mapped to SSC 8p2.3 (PDE6B), 8p1.1 (PEPS), 8q1.1-1.2 (GNRHR) and 8q2.2-2.4 (FGF2). These assignments provide additional benchmarks for the comparative map and help define the level of gene order conserved between HSA 4 and SSC 8.
US Department of Agriculture, US Meat Animal Research Center, Clay Center, NE 68933-0166, USA.
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Rohrer
D015106:3',5'-Cyclic-GMP Phosphodiesterases / Q000235:genetics; D000818:Animals; D002871:Chromosome Banding; D002874:Chromosome Mapping / Q000662:veterinary; D002894:Chromosomes, Human, Pair 4; D054707:Cyclic Nucleotide Phosphodiesterases, Type 6; D016222:Fibroblast Growth Factor 2 / Q000235:genetics; D016678:Genome; D006801:Humans; D017404:In Situ Hybridization, Fluorescence; D007931:Leucyl Aminopeptidase / Q000235:genetics; D011966:Receptors, LHRH / Q000235:genetics; D013552:Swine / Q000235:genetics*
D011966:Receptors, LHRH; D016222:Fibroblast Growth Factor 2; D015106:3',5'-Cyclic-GMP Phosphodiesterases; D054707:Cyclic Nucleotide Phosphodiesterases, Type 6; C517431:PDE6B protein, human; D007931:Leucyl Aminopeptidase