Liberation of hydrogen sulfide during the catalytic action of Desulfovibrio hydrogenase under the atmosphere of hydrogen.
The active site of [NiFe] hydrogenase from Desulfovibrio species is composed of a binuclear Ni-Fe complex bearing three diatomic nonprotein ligands to Fe and three bridges between the two metals, two of which are thiolate side chains of the protein moiety. The third bridging atom in the enzyme isolated from D. vulgaris Miyazaki F was suggested to be sulfur species, but was suggested to be oxygen species in D. gigas enzyme. When the hydrogenase from D. vulgaris Miyazaki F was incubated under the atmosphere of H2, H2S was liberated from the enzyme only in the presence of its electron carrier, cytochrome c3 or methylviologen. The amount of H2S liberation was little in the absence of electron carrier or essentially null when the enzyme was incubated under N2. The amount of H2S liberated was about 37% of the hydrogenase contained in the reaction vial in molar basis. These observations are in agreement with the recent observation that the third bridging site at the Ni-Fe active site is vacant in the reduced form of the enzyme revealed by X-ray crystallography.
Graduate School of Science, Kyoto University, Japan. higuchi@kuchem.kyoto-u.ac.jp
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D000421:Alcaligenes / Q000201:enzymology; D001665:Binding Sites; D002384:Catalysis; D016969:Desulfovibrio vulgaris / Q000201:enzymology*; D004579:Electron Transport; D006859:Hydrogen / Q000737:chemistry*; D006862:Hydrogen Sulfide / Q000737:chemistry* / Q000378:metabolism; D006863:Hydrogen-Ion Concentration; D006864:Hydrogenase / Q000737:chemistry* / Q000378:metabolism; D008958:Models, Molecular; D010088:Oxidoreductases / Q000737:chemistry; D013696:Temperature
D006859:Hydrogen; D010088:Oxidoreductases; C043296:nickel-iron hydrogenase; C021376:hydrogen dehydrogenase; D006864:Hydrogenase; D006862:Hydrogen Sulfide