Nitrogen-15 chemical shifts in AT (adenine-thymine) and CG (cytosine-guanine) nucleic acid base pairs.
This paper presents ab initio (DFT) calculations of the 15N chemical shifts in AT (Adenine-Thymine) and CG (Cytosine-Guanine) nucleic acid base pairs. Calculations were done on 14 AT and 18 CG base pairs using experimental (X-ray) geometries obtained from several DNA decamers. The calculated chemical shifts are compared with the experimental values in the pure bases and subjected to statistical analysis to explore their sensitivity to the local geometry and pair helix parameters. The results indicate that the 15N chemical shifts, isotropic and principal components are quite sensitive to small changes in the geometry of the pairs, but they do not correlate well with the helix pair parameters. From the statistical analysis, several linear correlations between structural parameters and chemical shifts emerge. These relationships may serve as a foundation to extract information on molecular structure from 15N chemical shift measurements.
Center for High Performance Computing, University of Utah, Salt Lake City 84112-0190, USA. facelli@chpc.utah.edu
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D000225:Adenine / Q000737:chemistry*; D020029:Base Pairing; D003198:Computer Simulation; D018360:Crystallography, X-Ray; D003596:Cytosine / Q000737:chemistry*; D006147:Guanine / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy; D015233:Models, Statistical; D009587:Nitrogen Isotopes; D013941:Thymine / Q000737:chemistry*
D009587:Nitrogen Isotopes; D006147:Guanine; D003596:Cytosine; D000225:Adenine; D013941:Thymine