Conformation in solution and dynamics of a structurally constrained linear insect kinin pentapeptide analogue.
The preferred conformations of the active diuretic insect kinin pentapeptide analogue Phe-Phe-Aib-Trp-Gly-NH2 were studied using nmr spectroscopy and molecular modeling. Structure sets consistent with rotating frame nuclear Overhauser effect spectroscopy distance constraints obtained by restrained simulated annealing in vacuo indicate a predominant population of a type II beta-turn involving the Phe1-Trp4 region. An equilibrium between this type II and a type I beta-turn formed by residues Phe2 and Gly5 was observed in a 5 ns restrained molecular dynamics simulation using the implicit generalized Born solvent accessible surface area (GB/SA) solvation model. When subjected to 500 ps dynamics with explicit water both beta-turn folds were conserved throughout the simulations. The results obtained with implicit and explicit solvation models are compared, and their consistency with the nmr observations is discussed. The behavior of the linear pentapeptide in this study is in agreement with an earlier report on the consensus conformation of the insect kinin active core derived from analysis of cyclic active analogues.
Moyna
G
G
Department of Chemistry, Texas A&M University, College Station 77842-3012, USA.
Williams
H J
HJ
Nachman
R J
RJ
Scott
A I
AI
D000818:Animals; D019476:Insect Proteins / Q000737:chemistry*; D007705:Kinins / Q000737:chemistry*; D008958:Models, Molecular; D009479:Neuropeptides / Q000737:chemistry; D009842:Oligopeptides / Q000737:chemistry*; D010446:Peptide Fragments / Q000737:chemistry*; D011487:Protein Conformation; D012996:Solutions; D013816:Thermodynamics
D019476:Insect Proteins; D007705:Kinins; D009479:Neuropeptides; D009842:Oligopeptides; D010446:Peptide Fragments; D012996:Solutions