title: Major interference from leukocytes in reverse transcription-PCR identified as neurotoxin ribonuclease from eosinophils: detection of residual chronic myelogenous leukemia from cell lysates by use of an eosinophil-depleted cell preparation.
abstract: BACKGROUND
  The extraction of RNA from leukocytes for reverse transcription-PCR (RT-PCR) is time-consuming and contributes to variation in analysis of the Philadelphia (Ph1) chromosome of chronic myelogenous leukemia (CML) by RT-PCR. To detect residual CML after bone marrow transplantation, mRNA from at least 10(5) leukocytes should be analyzed, but the RNase activity of the cells precludes simple leukocytes lysis as an alternative to RNA extraction. We sought to identify the main source of RNase activity of leukocytes.
  
  
  METHODS
  We used a three-step chromatographic process and amino acid sequence analysis. We selected eosinophil-free granulocytes by using a biotinylated CD16 antibody and selected mononuclear cells by fractionating the leukocytes with a Ficoll-Paque(R) density gradient.
  
  
  RESULTS
  Chromatography and amino acid sequencing identified eosinophil-derived neurotoxin (EDN) as the main source of leukocyte RNase. Depletion of eosinophils reduced the EDN content of cell lysates by approximately 90%, allowing a signal from a lysate of 50 K562 Ph1-positive cells mixed with 10(5) CD16(+) granulocytes that was equivalent to 77% of the signal in the absence of leukocytes. A similar lysate with mononuclear cells gave a signal equivalent to 53% of that without mononuclear cells. RNA extraction gave a signal equivalent to only 24% of the leukocyte-free control.
  
  
  CONCLUSIONS
  The depletion of eosinophils during the preparation of leukocyte samples for RT-PCR efficiently reduces the risk of mRNA degradation by ribonucleases, enabling RT-PCR analysis directly from cell lysates with a better signal than can be obtained by RNA extraction.
authors: Department of Clinical Chemistry, University of Turku, Finland. mauham@utu.fi
authors: M M
authors: MM
authors: Hämäläinen
authors: J U
authors: JU
authors: Eskola
authors: J
authors: J
authors: Hellman
authors: K
authors: K
authors: Pulkki
mesh_terms: D000595:Amino Acid Sequence; D001798:Blood Proteins / Q000302:isolation & purification* / Q000378:metabolism; D002850:Chromatography, Gel; D002852:Chromatography, Ion Exchange; D047208:Eosinophil-Derived Neurotoxin; D004804:Eosinophils / Q000201:enzymology*; D006801:Humans; D015464:Leukemia, Myelogenous, Chronic, BCR-ABL Positive / Q000175:diagnosis*; D007962:Leukocytes / Q000737:chemistry* / Q000201:enzymology; D008969:Molecular Sequence Data; D012334:RNA, Neoplasm / Q000032:analysis / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000379:methods*; D012260:Ribonucleases / Q000037:antagonists & inhibitors / Q000378:metabolism*
chemical_list: D001798:Blood Proteins; D012334:RNA, Neoplasm; D047208:Eosinophil-Derived Neurotoxin; D012260:Ribonucleases