title: Sequence-divergent units of the ABA-1 polyprotein array of the nematode Ascaris suum have similar fatty-acid- and retinol-binding properties but different binding-site environments.
abstract: Polyproteins comprise long polypeptides that are post-translationally cleaved into proteins of different function, or tandemly repetitive polypeptides which are processed into multiple versions of proteins which are presumed to have the same function. In the latter case the individual units of the polyprotein can differ substantially in sequence. Identity of function between the different units therefore cannot be assumed. Here we have examined the ABA-1 polyprotein allergen of the parasitic nematode Ascaris suum and found it to contain units which show a 50% difference in amino acid sequence. The parasite therefore produces at least two radically different forms of the allergen encoded within the polyprotein array. In fluorescence-based ligand-binding assays, recombinant polypeptides representing the two forms (designated ABA-1A1 and ABA-1B1) showed similar binding affinities for a range of fluorescent active-site probes [retinol, dansylundecanoic acid, dansyl-DL-alpha-amino-octanoic acid, cis-parinaric acid (cPnA)] and for the non-specific hydrophobic surface probe 8-anilinonaphthalene-1-sulphonic acid. However, the molecular environments in the active sites are markedly different, as indicated by disparate fluorescence emission peaks and intensities of bound probes. CD showed that the proteins have similar secondary structures but differ in susceptibility to chemical denaturation/unfolding by guanidinium chloride. Both retain a single conserved tryptophan residue in a characteristic non-polar environment, as revealed by extreme fluorescence blue shift. Thus the gross differences in sequence of the two proteins are not reflected in their ligand-binding specificities but in their binding-site environments.
authors.affiliation: Division of Infection and Immunity, Institute of Biomedical and Life Sciences, Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, Scotland, UK.
authors.forename: J
authors.initials: J
authors.lastname: Moore
authors.forename: L
authors.initials: L
authors.lastname: McDermott
authors.forename: N C
authors.initials: NC
authors.lastname: Price
authors.forename: S M
authors.initials: SM
authors.lastname: Kelly
authors.forename: A
authors.initials: A
authors.lastname: Cooper
authors.forename: M W
authors.initials: MW
authors.lastname: Kennedy
mesh_terms: D000485:Allergens; D000595:Amino Acid Sequence; D000818:Animals; D000947:Antigens, Helminth / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D052179:Antigens, Plant; D017165:Ascaris suum / Q000737:chemistry* / Q000235:genetics; D001665:Binding Sites; D002942:Circular Dichroism; D003001:Cloning, Molecular; D005227:Fatty Acids / Q000378:metabolism*; D015723:Gene Library; D014644:Genetic Variation / Q000235:genetics; D015801:Helminth Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D008024:Ligands; D008969:Molecular Sequence Data; D011485:Protein Binding; D011489:Protein Denaturation; D017433:Protein Structure, Secondary; D011994:Recombinant Proteins / Q000737:chemistry / Q000378:metabolism; D013050:Spectrometry, Fluorescence; D017186:Titrimetry; D014364:Tryptophan / Q000235:genetics; D014801:Vitamin A / Q000378:metabolism*
chemical_list: C093689:ABA-1 protein, Ascaris suum; D000485:Allergens; D000947:Antigens, Helminth; D052179:Antigens, Plant; D005227:Fatty Acids; D015801:Helminth Proteins; D008024:Ligands; D011994:Recombinant Proteins; D014801:Vitamin A; D014364:Tryptophan