title: Thermodynamics and kinetics of a folded-folded' transition at valine-9 of a GCN4-like leucine zipper.
abstract: Spin inversion transfer (SIT) NMR experiments are reported probing the thermodynamics and kinetics of interconversion of two folded forms of a GCN4-like leucine zipper near room temperature. The peptide is 13Calpha-labeled at position V9(a) and results are compared with prior findings for position L13(e). The SIT data are interpreted via a Bayesian analysis, yielding local values of T1a, T1b, kab, kba, and Keq as functions of temperature for the transition FaV9 right arrow over left arrow FbV9 between locally folded dimeric forms. Equilibrium constants, determined from relative spin counts at spin equilibrium, agree well with the ratios kab/kba from the dynamic SIT experiments. Thermodynamic and kinetic parameters are similar for V9(a) and L13(e), but not the same, confirming that the molecular conformational population is not two-state. The energetic parameters determined for both sites are examined, yielding conclusions that apply to both and are robust to uncertainties in the preexponential factor (kT/h) of the Eyring equation. These conclusions are 1) the activation free energy is substantial, requiring a sparsely populated transition state; 2) the transition state's enthalpy far exceeds that of either Fa or Fb; 3) the transition state's entropy far exceeds that of Fa, but is comparable to that of Fb; 4) "Arrhenius kinetics" characterize the temperature dependence of both kab and kba, indicating that the temperatures of slow interconversion are not below that of the glass transition. Any postulated free energy surface for these coiled coils must satisfy these constraints.
authors.affiliation: Department of Chemistry, Washington University, St. Louis, Missouri 63130, USA.
authors.forename: D A
authors.initials: DA
authors.lastname: d'Avignon
authors.forename: G L
authors.initials: GL
authors.lastname: Bretthorst
authors.forename: M E
authors.initials: ME
authors.lastname: Holtzer
authors.forename: A
authors.initials: A
authors.lastname: Holtzer
mesh_terms: D000595:Amino Acid Sequence; D001499:Bayes Theorem; D055592:Biophysical Phenomena; D001703:Biophysics; D002247:Carbon Isotopes; D004268:DNA-Binding Proteins; D005656:Fungal Proteins / Q000737:chemistry*; D007700:Kinetics; D016350:Leucine Zippers; D009682:Magnetic Resonance Spectroscopy; D008969:Molecular Sequence Data; D011487:Protein Conformation; D017510:Protein Folding; D011494:Protein Kinases / Q000737:chemistry*; D029701:Saccharomyces cerevisiae Proteins; D013816:Thermodynamics; D014633:Valine / Q000737:chemistry
chemical_list: D002247:Carbon Isotopes; D004268:DNA-Binding Proteins; D005656:Fungal Proteins; D029701:Saccharomyces cerevisiae Proteins; D011494:Protein Kinases; D014633:Valine