title: Partial kinetoplast-mitochondrial gene organization and expression in the respiratory deficient plant trypanosomatid Phytomonas serpens.
abstract: In plant-dwelling trypanosomatids from the genus Phytomonas, mitochondrial functions, such as cytochrome mediated respiration, ATP production and Krebs cycle, are missing, and cell energetics is based on the glycolysis. Using Blue Native/Tricine-SDS two-dimensional gel electrophoretic analysis, we observed that mitochondrial respiratory Complexes III (cytochrome bc1) and IV (cytochrome c oxidase) were absent in Phytomonas serpens; however, Complex V (ATPase) was present. A deletion of the genes for cytochrome c oxidase subunit III (COIII) and apocytochrome b (Cyb) was identified within the 6234 bp sequenced region of the 31 kb maxicircle kinetoplast DNA. Genes, found in this region, include 12S and 9S ribosomal RNAs, subunits 7, 8 and 9 of NADH dehydrogenase (ND7, ND8 and ND9) and subunit 6 of ATPase (A6 or MURF4), as well as the genes (MURF1, MURF5 and G3) with unknown function. Most genes are actively transcribed and some mRNAs are edited. Fully edited mRNAs for A6 and G3 were abundant, while edited ND7 transcripts were rare, and only partially edited and pre-edited transcripts for ND8 were detected. The data show that the mitochondrial genome of P. serpens is functional, although its functions may be limited to expressing the ATPase and, possibly, NADH dehydrogenase complexes.
authors.affiliation: Department of Biology, University of California, Riverside 92521, USA. dimitri@maslov.ucr.edu
authors.forename: D A
authors.initials: DA
authors.lastname: Maslov
authors.forename: P
authors.initials: P
authors.lastname: Nawathean
authors.forename: J
authors.initials: J
authors.lastname: Scheel
mesh_terms: D000251:Adenosine Triphosphatases / Q000235:genetics / Q000378:metabolism; D000595:Amino Acid Sequence; D000818:Animals; D001059:Apoproteins / Q000235:genetics; D001483:Base Sequence; D015152:Blotting, Northern; D003573:Cytochrome b Group / Q000235:genetics; D045303:Cytochromes b; D018105:DNA, Kinetoplast / Q000235:genetics* / Q000378:metabolism; D014450:Electron Transport Complex III / Q000235:genetics; D003576:Electron Transport Complex IV / Q000235:genetics; D004591:Electrophoresis, Polyacrylamide Gel; D017353:Gene Deletion; D017125:Genes, Protozoan; D018551:Solanum lycopersicum / Q000469:parasitology; D008928:Mitochondria / Q000201:enzymology; D008969:Molecular Sequence Data; D009247:NADH, NADPH Oxidoreductases / Q000235:genetics / Q000378:metabolism; D012335:RNA, Ribosomal / Q000235:genetics; D014351:Trypanosomatina / Q000737:chemistry / Q000201:enzymology / Q000235:genetics*
chemical_list: D001059:Apoproteins; D003573:Cytochrome b Group; D018105:DNA, Kinetoplast; D012335:RNA, Ribosomal; D045303:Cytochromes b; D009247:NADH, NADPH Oxidoreductases; D003576:Electron Transport Complex IV; D000251:Adenosine Triphosphatases; D014450:Electron Transport Complex III