title: Role of the distal phenylalanine 54 on the structure, stability, and ligand binding of Coprinus cinereus peroxidase.
abstract: Resonance Raman and electronic absorption spectra obtained at various pH values for the Fe3+ form of distal F54 mutants of Coprinus cinereus peroxidase are reported, together with the Fe2+ form and fluoride and imidazole adducts at pH 6.0, 5.0, and 10.5, respectively. The distal phenylalanine residue has been replaced by the small aliphatic residues glycine and valine and the hydrogen-bonding aromatic residues tyrosine and tryptophan (F54G, -V, -Y, and -W, respectively). These mutations resulted in transitions between ferric high-spin five-coordinate and six-coordinate forms, and caused a decrease of the pKa of the alkaline transition together with a higher tendency for unfolding. The mutations also alter the ability of the proteins to bind fluoride in such a way that those that are six-coordinate at pH 5.0 bind more strongly than both wild-type CIP and F54Y which are five-coordinate at this pH value. The data provide evidence that the architecture of the distal pocket of CIP is altered by the mutations. Direct evidence is provided that the distal phenylalanine plays an important role in controlling the conjugation between the vinyl double bonds and the porphyrin macrocycle, as indicated by the reorientation of the vinyl groups upon mutation of phenylalanine with the small aliphatic side chains of glycine and valine residues. Furthermore, it appears that the presence of the hydrogen-bonding tyrosine or tryptophan in the cavity increases the pKa of the distal histidine for protonation compared with that of wild-type CIP.
authors.affiliation: Dipartimento di Chimica, Universita' di Firenze, Italy.
authors.forename: F
authors.initials: F
authors.lastname: Neri
authors.forename: C
authors.initials: C
authors.lastname: Indiani
authors.forename: B
authors.initials: B
authors.lastname: Baldi
authors.forename: J
authors.initials: J
authors.lastname: Vind
authors.forename: K G
authors.initials: KG
authors.lastname: Welinder
authors.forename: G
authors.initials: G
authors.lastname: Smulevich
mesh_terms: D001665:Binding Sites / Q000235:genetics; D003302:Coprinus / Q000201:enzymology* / Q000235:genetics; D004795:Enzyme Stability / Q000235:genetics; D005656:Fungal Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D005998:Glycine / Q000235:genetics; D006863:Hydrogen-Ion Concentration; D007093:Imidazoles / Q000737:chemistry; D008024:Ligands; D016297:Mutagenesis, Site-Directed; D009195:Peroxidase / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D010649:Phenylalanine / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D012969:Sodium Fluoride / Q000737:chemistry / Q000378:metabolism; D013053:Spectrophotometry; D013059:Spectrum Analysis, Raman; D013329:Structure-Activity Relationship; D017186:Titrimetry; D014364:Tryptophan / Q000235:genetics; D014443:Tyrosine / Q000235:genetics; D014633:Valine / Q000235:genetics
chemical_list: D005656:Fungal Proteins; D007093:Imidazoles; D008024:Ligands; D014443:Tyrosine; D010649:Phenylalanine; C029899:imidazole; D014364:Tryptophan; D012969:Sodium Fluoride; D009195:Peroxidase; D014633:Valine; D005998:Glycine