title: Characterization of point mutations in patients with pyruvate dehydrogenase deficiency: role of methionine-181, proline-188, and arginine-349 in the alpha subunit.
abstract: Human pyruvate dehydrogenase (E1), a heterotetramer (alpha2beta2), is the first component of the pyruvate dehydrogenase complex (PDC). E1 catalyzes the thiamin pyrophosphate (TPP)-dependent decarboxylation of pyruvate and the reductive acetylation of the dihydrolipoamide acetyltransferase component. Site-directed mutagenesis was employed to recreate three point mutations in the alpha subunit identified in E1-deficient patients, M181V, R349H, and P188L (P188A mutant E1 was used because of the very low level of expression of P188L), to investigate the functional roles of these three amino acid residues. P188A mutant E1 was much less thermostable than the wild-type E1. The kcats of M181V and P188A mutant E1s determined in the PDC reaction were 38 and 24% of that of the wild-type enzyme, respectively. The apparent Km for TPP for M181V increased significantly (approx 250-fold when determined in the PDC assay), while the apparent Km for pyruvate increased by only about 3-fold. In contrast, P188A had similar Kms for the coenzyme and the substrate as the wild-type. Km values for R349H were not determined due to the extremely low activity of this mutant (1.2% of the wild-type E1-specific activity measured in the PDC assay). Wild-type E1 displayed a lag phase in the progress curve of the PDC reaction measured in the presence of low TPP concentrations (below 1 microM) only. All mutants had a lag phase that was not eliminated even at very high TPP concentrations, suggesting modifications in the conformation of the active site. Kinetic analysis indicated thiamin 2-thiothiazolone pyrophosphate (ThTTPP) to be an intermediate analog for wild-type human E1. M181V required a higher concentration of ThTTPP for inactivation than the wild-type and P188A E1s. The results of circular dichroism spectropolarimetry in the far UV region indicated that there were no major changes in the secondary structure of M181V, P188A, and R349H E1s. These mutant enzymes exhibited negative dichroic spectra at about 330 nm only in the presence of high TPP concentrations. This study suggests that arginine-349 is critical for E1's activity, methionine-181 is involved in the binding of TPP, and proline-188 is necessary for structural integrity of E1.
authors.affiliation: School of Medicine and Biomedical Sciences, State University of New York at Buffalo, New York, 14214, USA.
authors.forename: A
authors.initials: A
authors.lastname: Tripatara
authors.forename: L G
authors.initials: LG
authors.lastname: Korotchkina
authors.forename: M S
authors.initials: MS
authors.lastname: Patel
mesh_terms: D015086:2,6-Dichloroindophenol / Q000378:metabolism; D000107:Acetylation; D000123:Acetyltransferases / Q000378:metabolism; D019943:Amino Acid Substitution; D001051:Apoenzymes / Q000737:chemistry / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism; D001120:Arginine / Q000235:genetics* / Q000378:metabolism; D001665:Binding Sites; D002942:Circular Dichroism; D051047:Dihydrolipoyllysine-Residue Acetyltransferase; D004795:Enzyme Stability; D006801:Humans; D007700:Kinetics; D008715:Methionine / Q000235:genetics* / Q000378:metabolism; D017354:Point Mutation; D011392:Proline / Q000235:genetics* / Q000378:metabolism; D017433:Protein Structure, Secondary; D011768:Pyruvate Dehydrogenase Complex / Q000037:antagonists & inhibitors / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D015325:Pyruvate Dehydrogenase Complex Deficiency Disease / Q000201:enzymology* / Q000235:genetics; D019289:Pyruvic Acid / Q000378:metabolism / Q000494:pharmacology; D011994:Recombinant Proteins / Q000096:biosynthesis / Q000737:chemistry / Q000302:isolation & purification / Q000378:metabolism; D013816:Thermodynamics; D013835:Thiamine Pyrophosphate / Q000031:analogs & derivatives / Q000378:metabolism / Q000494:pharmacology
chemical_list: D001051:Apoenzymes; D011768:Pyruvate Dehydrogenase Complex; D011994:Recombinant Proteins; C033041:thiamine thiothiazolone pyrophosphate; D019289:Pyruvic Acid; D001120:Arginine; D011392:Proline; D008715:Methionine; D015086:2,6-Dichloroindophenol; D000123:Acetyltransferases; D051047:Dihydrolipoyllysine-Residue Acetyltransferase; D013835:Thiamine Pyrophosphate