Sedimentation equilibrium analysis of interference optical data by systematic noise decomposition.
An analytical method is described for removal of systematic signal offsets from interference optical data of sedimentation equilibrium gradients. It is demonstrated that the time-invariant signal contributions can be extracted from hydrodynamic modeling of interference profiles acquired during the approach to sedimentation equilibrium. This method is based on a technique for the explicit algebraic calculation of time-invariant noise components from sedimentation data, recently described for the direct modeling of sedimentation velocity experiments (P. Schuck and B. Demeler, Biophys. J. 76, 2288-2296, 1999). The calculated systematic signal offset is very well defined by the experimental data, stable over time, and its calculation is robust and to a large extent independent of the hydrodynamic model. The calculated time-invariant signal can be used to reduce the systematic errors in the measured sedimentation equilibrium profiles by more than an order of magnitude. It is shown that the resulting net equilibrium fringe profiles after subtraction of the time-invariant noise component allow equilibrium analyses consistent with those obtained from absorbance profiles. However, due to a higher dynamic range and the higher number of data points, the parameters derived from the net interference analysis can exhibit significantly improved precision. The presented study demonstrates the feasibility and potential of this analytical method for full exploitation of the remarkable precision of the interference optical data acquisition system, allowing sedimentation equilibrium experiments at loading concentrations below 0.05 mg/ml.
Schuck
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Molecular Interactions Resource, Bioengineering and Physical Science Program, ORS, Bethesda, Maryland 20892, USA.
D015395:Histocompatibility Antigens Class I; D007112:Immunity, Maternally-Acquired; D007074:Immunoglobulin G / Q000302:isolation & purification*; D008962:Models, Theoretical; D008970:Molecular Weight; D011506:Proteins / Q000302:isolation & purification*; D011961:Receptors, Fc / Q000302:isolation & purification*; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity; D012984:Software; D014461:Ultracentrifugation / Q000295:instrumentation / Q000379:methods*
D015395:Histocompatibility Antigens Class I; D007074:Immunoglobulin G; D011506:Proteins; D011961:Receptors, Fc; C100688:Fc receptor, neonatal