Solvent-exposed tryptophans probe the dynamics at protein surfaces.
The dynamics of single tryptophan (W) side chain of protease subtilisin Carlsberg (SC) and myelin basic protein (MBP) were used for probing the surface of these proteins. The W side chains are exposed to the solvent, as shown by the extent of quenching of their fluorescence by KI. Time-resolved fluorescence anisotropy measurements showed that the rotational motion of W is completely unhindered in the case of SC and partially hindered in the case of MBP. The rotational correlation time (phi) associated with the fast local motion of W did not scale linearly with the bulk solvent viscosity (eta) in glycerol-water mixtures. In contrast, phi values of either W side chains in the denatured proteins or the free W scaled almost linearly with eta, as expected by the Stokes-Einstein relationship. These results were interpreted as indicating specific partitioning of water at the surface of the proteins in glycerol-water mixtures.
Lakshmikanth
G S
GS
Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400 005, India.
Krishnamoorthy
G
G
D055592:Biophysical Phenomena; D001703:Biophysics; D005454:Fluorescence Polarization; D005990:Glycerol; D008958:Models, Molecular; D004676:Myelin Basic Protein / Q000737:chemistry; D011487:Protein Conformation; D011489:Protein Denaturation; D011506:Proteins / Q000737:chemistry*; D012997:Solvents; D013381:Subtilisins / Q000737:chemistry; D013499:Surface Properties; D013816:Thermodynamics; D014364:Tryptophan / Q000737:chemistry*; D014783:Viscosity; D014867:Water
D004676:Myelin Basic Protein; D011506:Proteins; D012997:Solvents; D014867:Water; D014364:Tryptophan; D013381:Subtilisins; D005990:Glycerol