title: Fluorescence In situ hybridization assay using peptide nucleic acid probes for differentiation between tuberculous and nontuberculous mycobacterium species in smears of mycobacterium cultures.
abstract: TB PNA FISH is a new fluorescence in situ hybridization (FISH) method using peptide nucleic acid (PNA) probes for differentiation between species of the Mycobacterium tuberculosis complex (MTC) and nontuberculous mycobacteria (NTM) in acid-fast bacillus-positive (AFB+) cultures is described. The test is based on fluorescein-labelled PNA probes that target the rRNA of MTC or NTM species applied to smears of AFB+ cultures for microscopic examination. Parallel testing with the two probes serves as an internal control for each sample such that a valid test result is based on one positive and one negative reaction. TB PNA FISH was evaluated with 30 AFB+ cultures from Denmark and 42 AFB+ cultures from Thailand. The MTC-specific PNA probe showed diagnostic sensitivities of 84 and 97%, respectively, and a diagnostic specificity of 100% in both studies, whereas the NTM-specific PNA probe showed diagnostic sensitivities of 91 and 64%, respectively, and a diagnostic specificity of 100% in both studies. The low sensitivity of the NTM-specific PNA probe in the Thai study was due to a relatively high prevalence of Mycobacterium fortuitum, which is not identified by the probe. In total, 63 (87%) of the cultures were correctly identified as MTC (n = 46) or NTM (n = 17), whereas the remaining 9 were negative with both probes and thus the results were inconclusive. None of the samples were incorrectly identified as MTC or NTM; thus, the predictive value of a valid test result obtained with TB PNA FISH was 100%.
authors.affiliation: DAKO A/S, 2600 Glostrup, Denmark.
authors.forename: H
authors.initials: H
authors.lastname: Stender
authors.forename: K
authors.initials: K
authors.lastname: Lund
authors.forename: K H
authors.initials: KH
authors.lastname: Petersen
authors.forename: O F
authors.initials: OF
authors.lastname: Rasmussen
authors.forename: P
authors.initials: P
authors.lastname: Hongmanee
authors.forename: H
authors.initials: H
authors.lastname: Miörner
authors.forename: S E
authors.initials: SE
authors.lastname: Godtfredsen
mesh_terms: D001483:Base Sequence; D004275:DNA, Ribosomal / Q000737:chemistry; D006801:Humans; D017404:In Situ Hybridization, Fluorescence; D008969:Molecular Sequence Data; D009161:Mycobacterium / Q000235:genetics*; D015341:Nucleic Acid Probes; D020135:Peptide Nucleic Acids; D014376:Tuberculosis / Q000175:diagnosis*
chemical_list: D004275:DNA, Ribosomal; D015341:Nucleic Acid Probes; D020135:Peptide Nucleic Acids