title: Nested allele-specific PCR primers distinguish genetic groups of Uncinula necator.
abstract: Isolates of the obligately biotrophic fungus Uncinula necator cluster in three distinct genetic groups (groups I, II, and III). We designed PCR primers specific for these groups in order to monitor field populations of U. necator. We used the nucleotide sequences of the gene that encodes eburicol 14alpha-demethylase (CYP51) and of the ribosomal DNA internal transcribed spacer 1 (ITS1), ITS2, and 5. 8S regions. We identified four point mutations (three in CYP51 and one in ITS1) that distinguished groups I and II from group III based on a sample of 132 single-spore isolates originating from Europe, Tunisia, Israel, India, and Australia. We developed a nested allele-specific PCR assay in which the CYP51 point mutations were used to detect and distinguish groups I and II from group III in crude mildewed samples from vineyards. In a preliminary study performed with samples from French vineyards in which isolates belonging to genetic groups I and III were present, we found that a shift from a population composed primarily of group I isolates to a population composed primarily of group III isolates occurred during the grapevine growing season.
authors.affiliation: Unité de Recherches en Santé Végétale, Institut National de la Recherche Agronomique, Domaine de la Grande Ferrade, 33883 Villenave d'Ornon cédex, France. delye@bordeaux.inra.fr
authors.forename: C
authors.initials: C
authors.lastname: Délye
authors.forename: V
authors.initials: V
authors.lastname: Ronchi
authors.forename: F
authors.initials: F
authors.lastname: Laigret
authors.forename: M F
authors.initials: MF
authors.lastname: Corio-Costet
mesh_terms: D000483:Alleles; D001203:Ascomycota / Q000145:classification* / Q000235:genetics*; D003001:Cloning, Molecular; D003577:Cytochrome P-450 Enzyme System / Q000235:genetics; D017931:DNA Primers / Q000235:genetics*; D004271:DNA, Fungal / Q000235:genetics; D004275:DNA, Ribosomal / Q000235:genetics; D010088:Oxidoreductases / Q000235:genetics; D017354:Point Mutation; D016133:Polymerase Chain Reaction / Q000379:methods*; D012340:RNA, Ribosomal, 5.8S / Q000235:genetics; D019685:Rosales / Q000382:microbiology; D017422:Sequence Analysis, DNA; D058886:Sterol 14-Demethylase
chemical_list: D017931:DNA Primers; D004271:DNA, Fungal; D004275:DNA, Ribosomal; D012340:RNA, Ribosomal, 5.8S; D003577:Cytochrome P-450 Enzyme System; D010088:Oxidoreductases; D058886:Sterol 14-Demethylase