title: In vivo transcription factor recruitment during thyroid hormone receptor-mediated activation.
abstract: Thyroid hormone receptor (TR) can act as both a transcriptional activator and a silencer. Optimal activation by TR requires synergism with activator(s) bound to the promoter (promoter proximal activator). It is thought that liganded TR either helps to recruit preinitiation complexes (PIC) to the promoter or activates the PIC already recruited. However, the studies analyzing the TR action on the PIC formation were done in vitro and, therefore, it is not clear how relevant they are to the in vivo TR action. For example, in vivo, the TR can act from distances equal to or greater than a kilobase from the promoter, but such distant effect is not reproducible in vitro. In this study, we used the PIN*POINT (ProteIN POsition Identification with Nuclease Tail) assay to define the molecular mechanism of TR action on transcription from the thymidine kinase promoter in the cellular context. We demonstrate that the recruitment of promoter-proximal activator Sp1, and the components of the basal transcription factors such as TBP, TFIIB, and Cdk7, is enhanced with thyroid hormone activation. Our results suggest that DNA forms a loop with TR-mediated activation to accommodate interactions between the liganded TR complex and the complex formed on the promoter. We also show that Sp1 bound to the promoter is essential for the DNA looping and recruitment of basal transcription factors such as TFIIB and Cdk7 but not for recruitment of TBP. On the basis of these findings, we present a model that illustrates the molecular mechanism of TR-mediated activation in vivo.
authors.affiliation: Molecular and Cellular Endocrinology Branch, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-1654, USA.
authors.forename: M K
authors.initials: MK
authors.lastname: Kim
authors.forename: J S
authors.initials: JS
authors.lastname: Lee
authors.forename: J H
authors.initials: JH
authors.lastname: Chung
mesh_terms: D001483:Base Sequence; D018844:Cyclin-Dependent Kinases; D004247:DNA / Q000235:genetics / Q000378:metabolism; D004268:DNA-Binding Proteins / Q000378:metabolism; D006367:HeLa Cells; D006801:Humans; D008954:Models, Biological; D008969:Molecular Sequence Data; D011033:Podophyllin / Q000031:analogs & derivatives / Q000378:metabolism; D011034:Podophyllotoxin / Q000031:analogs & derivatives; D016133:Polymerase Chain Reaction; D011401:Promoter Regions, Genetic; D017346:Protein Serine-Threonine Kinases / Q000378:metabolism; D011988:Receptors, Thyroid Hormone / Q000235:genetics / Q000378:metabolism*; D035181:TATA-Box Binding Protein; D013937:Thymidine Kinase / Q000096:biosynthesis / Q000235:genetics*; D013963:Thyroid Hormones / Q000494:pharmacology / Q000502:physiology; D035581:Transcription Factor TFIIB; D014157:Transcription Factors / Q000378:metabolism*; D014158:Transcription, Genetic / Q000187:drug effects; D014162:Transfection; D000095043:Cyclin-Dependent Kinase-Activating Kinase
chemical_list: D004268:DNA-Binding Proteins; D011988:Receptors, Thyroid Hormone; D035181:TATA-Box Binding Protein; D013963:Thyroid Hormones; D035581:Transcription Factor TFIIB; D014157:Transcription Factors; C003170:mitopodozide; D011033:Podophyllin; D004247:DNA; D013937:Thymidine Kinase; D017346:Protein Serine-Threonine Kinases; D018844:Cyclin-Dependent Kinases; D011034:Podophyllotoxin; D000095043:Cyclin-Dependent Kinase-Activating Kinase; C000722416:CDK7 protein, human