title: Characterization of the hinges of the effector loop in the reaction pathway of the activation of ras-proteins. Kinetics of binding of beryllium trifluoride to V29G and I36G mutants of Ha-ras-p21.
abstract: This work experimentally confirms the pathway of activation of Ha-ras-p21, which was calculated by the method of Targeted Molecular Dynamics (TMD) (Díaz JF, Wroblowski B, Schlitter J, Engelborghs Y, 1997a, Proteins Struct Funct Genet 28:434-451). The process can be studied experimentally by analyzing the binding of BeF3- to the GDP complex of the active fluorescent mutant Y32W (Díaz JF, Sillen A, Engelborghs Y, 1997b, J Biol Chem 227:23138-23143). Two mutants, V29G and 136G, have been constructed at both sides of the effector loop of the active fluorescent mutant. This was done to check the proposed reaction pathway and to provide further insight into the mechanism of the activation of ras proteins. Both mutations accelerate the conformational isomerization with two orders of magnitude, demonstrating convincingly the role of these residues as hinges of the effector loop in one or more of the transitions of the conformational change. These results provide experimental support to the pathway calculated by TMD analysis.
authors.affiliation: Laboratory of Biomolecular Dynamics, Katholieke Universiteit Leuven, Heverlee, Belgium.
authors.forename: S
authors.initials: S
authors.lastname: Kuppens
authors.forename: J F
authors.initials: JF
authors.lastname: Díaz
authors.forename: Y
authors.initials: Y
authors.lastname: Engelborghs
mesh_terms: D001608:Beryllium / Q000737:chemistry* / Q000378:metabolism; D005459:Fluorides / Q000737:chemistry* / Q000378:metabolism; D005998:Glycine / Q000235:genetics; D006153:Guanosine Diphosphate / Q000737:chemistry / Q000378:metabolism; D006801:Humans; D007532:Isoleucine / Q000235:genetics; D007700:Kinetics; D017354:Point Mutation; D011485:Protein Binding / Q000235:genetics; D011487:Protein Conformation; D016283:Proto-Oncogene Proteins p21(ras) / Q000737:chemistry* / Q000235:genetics* / Q000378:metabolism; D013816:Thermodynamics; D014633:Valine / Q000235:genetics
chemical_list: D007532:Isoleucine; D006153:Guanosine Diphosphate; C056920:beryllium trifluoride; C501009:HRAS protein, human; D016283:Proto-Oncogene Proteins p21(ras); D014633:Valine; D001608:Beryllium; D005459:Fluorides; D005998:Glycine