title: Hypomethylation of an expanded FMR1 allele is not associated with a global DNA methylation defect.
abstract: The vast majority of fragile-X full mutations are heavily methylated throughout the expanded CGG repeat and the surrounding CpG island. Hypermethylation initiates and/or stabilizes transcriptional inactivation of the FMR1 gene, which causes the fragile X-syndrome phenotype characterized, primarily, by mental retardation. The relation between repeat expansion and hypermethylation is not well understood nor is it absolute, as demonstrated by the identification of nonretarded males who carry hypomethylated full mutations. To better characterize the methylation pattern in a patient who carries a hypomethylated full mutation of approximately 60-700 repeats, we have evaluated methylation with the McrBC endonuclease, which allows analysis of numerous sites in the FMR1 CpG island, including those located within the CGG repeat. We report that the expanded-repeat region is completely free of methylation in this full-mutation male. Significantly, this lack of methylation appears to be specific to the expanded FMR1 CGG-repeat region, because various linked and unlinked repetitive-element loci are methylated normally. This finding demonstrates that the lack of methylation in the expanded CGG-repeat region is not associated with a global defect in methylation of highly repeated DNA sequences. We also report that de novo methylation of the expanded CGG-repeat region does not occur when it is moved via microcell-mediated chromosome transfer into a de novo methylation-competent mouse embryonal carcinoma cell line.
authors.affiliation: Department of Molecular and Medical Genetics, Oregon Health Sciences University, Portland, OR, USA.
authors.forename: R W
authors.initials: RW
authors.lastname: Burman
authors.forename: P A
authors.initials: PA
authors.lastname: Yates
authors.forename: L D
authors.initials: LD
authors.lastname: Green
authors.forename: P B
authors.initials: PB
authors.lastname: Jacky
authors.forename: M S
authors.initials: MS
authors.lastname: Turker
authors.forename: B W
authors.initials: BW
authors.lastname: Popovich
mesh_terms: D000328:Adult; D000483:Alleles; D020087:Alu Elements; D000818:Animals; D002478:Cells, Cultured; D018899:CpG Islands / Q000235:genetics; D019175:DNA Methylation; D004262:DNA Restriction Enzymes / Q000378:metabolism; D015252:Deoxyribonucleases, Type II Site-Specific / Q000378:metabolism; D051860:Fragile X Messenger Ribonucleoprotein 1; D005600:Fragile X Syndrome / Q000235:genetics*; D006801:Humans; D008297:Male; D051379:Mice; D009419:Nerve Tissue Proteins / Q000235:genetics*; D016601:RNA-Binding Proteins; D015183:Restriction Mapping; D018911:Trinucleotide Repeats / Q000235:genetics; D014960:X Chromosome / Q000235:genetics
chemical_list: D004262:DNA Restriction Enzymes; D015252:Deoxyribonucleases, Type II Site-Specific; D051860:Fragile X Messenger Ribonucleoprotein 1; D009419:Nerve Tissue Proteins; D016601:RNA-Binding Proteins; C497683:FMR1 protein, human; C497684:Fmr1 protein, mouse; C120301:McrBC endonuclease; C046751:endodeoxyribonuclease XmaIII