Selenium-dependent glutathione peroxidase modules encoded by RNA viruses.
Glutathione peroxidase (GPx) is the prototypical eukaryotic selenoprotein, with the rare amino acid selenocysteine (Sec) at the enzyme active site, encoded by the UGA codon in RNA. A DNA virus, Molluscum contagiosum, has now been shown to encode a functional selenium-dependent GPx enzyme. Using modifications of conventional sequence database searching techniques to locate potential viral GPx modules, combined with structurally guided comparative sequence analysis, we provide compelling evidence that Se-dependent GPx modules are encoded in a number of RNA viruses, including potentially serious human pathogens like HIV-1 and hepatitis C virus, coxsackievirus B3, HIV-2, and measles virus. Analysis of the sequences of multiple viral isolates reveals conservation of the putative GPx-related features, at least within viral subtypes or genotypes, supporting the hypothesis that these are functional GPx modules.
Zhang
W
W
Computational Center for Molecular Structure and Design, and Department of Pharmaceutical and Biomedical Sciences, The University of Georgia, Athens 30601-2352, USA.
Ramanathan
C S
CS
Nadimpalli
R G
RG
Bhat
A A
AA
Cox
A G
AG
Taylor
E W
EW
D000595:Amino Acid Sequence; D001483:Base Sequence; D003062:Codon; D017124:Conserved Sequence; D016208:Databases, Factual; D029822:Enterovirus B, Human / Q000235:genetics / Q000378:metabolism; D005979:Glutathione Peroxidase / Q000235:genetics* / Q000378:metabolism*; D015497:HIV-1 / Q000235:genetics / Q000378:metabolism; D015498:HIV-2 / Q000235:genetics / Q000378:metabolism; D016174:Hepacivirus / Q000235:genetics / Q000378:metabolism; D008459:Measles virus / Q000235:genetics / Q000378:metabolism; D008969:Molecular Sequence Data; D012328:RNA Viruses / Q000235:genetics / Q000378:metabolism*; D012643:Selenium / Q000378:metabolism*
D003062:Codon; D005979:Glutathione Peroxidase; D012643:Selenium