title: Characterisation of lactic acid bacteria from spoiled, vacuum-packaged, cold-smoked rainbow trout using ribotyping.
abstract: A total of 405 lactic acid bacteria (LAB) isolated from spoiled, vacuum-packaged, salted, sodium nitrite- or potassium nitrate-treated, cold-smoked rainbow trout stored at 4 degrees C or 8 degrees C were characterised and identified using a molecular method. The isolates were initially classified according to their restriction endonuclease profiles using HindIII and EcoRI restriction endonucleases and further characterised by rRNA gene restriction patterns (ribotypes). Numerical analysis of these ribopatterns was performed together with 19 reference LAB strain patterns in order to identify the isolates to species level. The strains were divided with HindIII and EcoRI ribopatterns into ten and nine clusters at the similarity level of 65% and 50%, respectively. The Leuconostoc-clusters and the Lb. sakei/Lb. curvatus-clusters formed the two main groups. Only one isolate was identified as Lactobacillus plantarum and no Carnobacterium strains were discovered. For both enzymes, the 35 isolates possessing six individual ribotypes and forming five clusters could not be identified further with the reference strains used. The relative proportion of Leuconostoc mesenteroides subsp. mesenteroides was higher in all samples stored at 4 degrees C. Most of the Leuconostoc citreum were found in the samples stored at 8 degrees C, and particularly in the nitrite-treated samples.
authors.affiliation: Department of Food and Environmental Hygiene, Faculty of Veterinary Medicine, University of Helsinki, Finland. ulrike.lyhs@helsinki.fi
authors.forename: U
authors.initials: U
authors.lastname: Lyhs
authors.forename: J
authors.initials: J
authors.lastname: Björkroth
authors.forename: H
authors.initials: H
authors.lastname: Korkeala
mesh_terms: D000818:Animals; D015139:Blotting, Southern; D016000:Cluster Analysis; D015342:DNA Probes / Q000737:chemistry; D004269:DNA, Bacterial / Q000737:chemistry; D015247:Deoxyribonuclease HindIII / Q000737:chemistry; D015252:Deoxyribonucleases, Type II Site-Specific / Q000737:chemistry; D005516:Food Microbiology; D018857:Food Packaging; D005519:Food Preservation; D007091:Image Processing, Computer-Assisted; D007778:Lactobacillus / Q000145:classification* / Q000235:genetics; D007934:Leuconostoc / Q000145:classification* / Q000235:genetics; D017686:Oncorhynchus mykiss / Q000382:microbiology*; D010802:Phylogeny; D012335:RNA, Ribosomal / Q000737:chemistry; D014618:Vacuum
chemical_list: D015342:DNA Probes; D004269:DNA, Bacterial; D012335:RNA, Ribosomal; D015247:Deoxyribonuclease HindIII; C046545:CCWGG-specific type II deoxyribonucleases; D015252:Deoxyribonucleases, Type II Site-Specific