Correlations and anticorrelations among nucleotide distributions along the genomes of various organisms.
We have analyzed correlations of nucleotide distributions along more than 50 megabases of the longest sequenced parts of the human, mouse, Drosophila, Arabidopsis, yeast, E.coli and three kinds of viral genomes. The strongest correlations were observed between the distributions of C and G, in particular in the genome of Drosophila. This correlation was much weaker, though still strong, in the human genome and E.coli that exhibited the same level of this correlation. The C/G correlation hardly originates from the isochores because the isochores were not reported to occur in the genomes of Drosophila and E. coil. The genomic distribution curves of adenine and thymine were also positively correlated in all analyzed organisms except for the yeast where they were anticorrelated. Still stronger anticorrelations were, however, observed between the genomic distributions of A and C and between G and T. These genomic distributions anticorrelated almost generally and very strong. These anticorrelations are likely to originate from point mutations resulting from unrepaired GA mispairing as a replication intermediate. The C/A or G/T anticorrelation or compensation is a very strong and general new phenomenon that shapes the genomic nucleotide sequences.
Häring
D
D
Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno.
Kypr
J
J
D000818:Animals; D017360:Arabidopsis / Q000235:genetics; D004331:Drosophila melanogaster / Q000235:genetics; D004926:Escherichia coli / Q000235:genetics; D016678:Genome; D016680:Genome, Bacterial; D016681:Genome, Fungal; D018745:Genome, Plant; D016679:Genome, Viral; D006564:Herpesviridae / Q000235:genetics; D015186:Hominidae / Q000235:genetics; D006801:Humans; D051379:Mice / Q000235:genetics; D015233:Models, Statistical; D012190:Retroviridae / Q000235:genetics; D012441:Saccharomyces cerevisiae / Q000235:genetics; D017422:Sequence Analysis, DNA; D013045:Species Specificity