title: Evaluation of an in-house polymerase chain reaction for detection of Neisseria gonorrhoeae in urogenital samples.
abstract: OBJECTIVE
  To develop and evaluate a one day in-house polymerase chain reaction (PCR) assay for the detection of Neisseria gonorrhoeae DNA in urogenital samples.
  
  
  METHODS
  429 urogenital specimens were tested for the presence of N gonorrhoeae by in-house PCR and by Gen-Probe. The PCR assay amplifies target sequences within the N gonorrhoeae cppB gene on the 4.2 kb cryptic plasmid, after which amplicons are detected by a streptavidinbiotin based enzyme immunoassay using an internal probe. Discordant specimens were further evaluated by repeating the PCR and the Gen-Probe assay, and by an additional PCR using another set of 16S primers followed by radioactive detection of amplicons on a Southern blot.
  
  
  RESULTS
  Of the 429 samples tested, 15 were found positive by in-house PCR, eight of which were confirmed by Gen-Probe. Of the seven discrepant samples, five were confirmed by 16S PCR and are also considered true positive. The remaining two samples were positive in the in-house PCR only, and are considered false positive. After resolution of discrepant samples, the sensitivities of the N gonorrhoeae assays were 100% and 61.5% for the in-house PCR and Gen-Probe, respectively, while specificities were comparable at 99.5% and 100%.
  
  
  CONCLUSIONS
  The in-house PCR for the detection of N gonorrhoeae DNA is at least comparable to Gen-Probe in performance. An extended evaluation period should elucidate if the additional five GO-PCR positive specimens, confirmed by 16S PCR, are caused by persistence of DNA or whether the method is indeed more sensitive.
authors.affiliation: Laboratory of Medical Microbiology, Veldhoven, The Netherlands. LVMM@worldonline.nl
authors.forename: R
authors.initials: R
authors.lastname: Roymans
authors.forename: G
authors.initials: G
authors.lastname: Onland
authors.forename: A
authors.initials: A
authors.lastname: Jansz
authors.forename: W
authors.initials: W
authors.lastname: Quint
authors.forename: E
authors.initials: E
authors.lastname: Boel
mesh_terms: D002584:Cervix Uteri / Q000382:microbiology; D004269:DNA, Bacterial / Q000032:analysis*; D005069:Evaluation Studies as Topic; D005260:Female; D006069:Gonorrhea / Q000175:diagnosis*; D006801:Humans; D008297:Male; D009344:Neisseria gonorrhoeae / Q000235:genetics*; D016133:Polymerase Chain Reaction / Q000379:methods*; D012680:Sensitivity and Specificity; D014521:Urethra / Q000382:microbiology
chemical_list: D004269:DNA, Bacterial