title: Complete sequence of plasmid pLH1 from lactobacillus helveticus ATCC15009: analysis reveals the presence of regions homologous to other native plasmids from the host strain.
abstract: The complete sequence for plasmid pLH1 from Lactobacillus helveticus ATCC15009 has been determined. Analysis of the 19,360-bp primary sequence revealed a putative replication origin and initiation protein, information that could provide the basis for the construction of cloning vectors for L. helveticus. Evidence that pLH1 is theta-replicating could be deduced from the plasmid size, from the homology to the replication protein of the Bacillus natto theta-replicating plasmid pLS32, and from the identification of a putative resolvase gene (orf-195). Although 14 open reading frames capable of encoding polypeptides longer than 100 amino acids were identified, none, on the basis of homology with known sequences, appeared to encode a well-characterized trait relevant to milk fermentation. Plasmid pLH1 revealed regions of identity with the smaller cryptic plasmids (pLH2 and pLH3) from the same strain and with other tracts of DNA, including insertion sequence elements, from a variety of other lactic acid bacteria. The presence of such regions provides a basis for developing an explanation of the phenotypic variability observed in these bacteria. The plasmid also appears to possess a number of genetic elements present in other lactic acid bacterial plasmids, conservation of which would be consistent with an important functional or evolutionary role. It could be argued that the plasmid complement of L. helveticus ATCC15009 consists of parasitic entities concerned only with their own replication and survival.
authors.affiliation: Food Science Division (Food Microbiology Unit), Department of Agriculture for Northern Ireland, Belfast, BT9 5PX, Northern Ireland. keith.thompson@dani.gov.uk
authors.forename: J K
authors.initials: JK
authors.lastname: Thompson
authors.forename: S
authors.initials: S
authors.lastname: Foley
authors.forename: K J
authors.initials: KJ
authors.lastname: McConville
authors.forename: C
authors.initials: C
authors.lastname: Nicholson
authors.forename: M A
authors.initials: MA
authors.lastname: Collins
authors.forename: R D
authors.initials: RD
authors.lastname: Pridmore
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D003001:Cloning, Molecular; D004269:DNA, Bacterial / Q000032:analysis; D007778:Lactobacillus / Q000737:chemistry / Q000235:genetics*; D008969:Molecular Sequence Data; D010957:Plasmids / Q000737:chemistry / Q000235:genetics*; D045522:Recombinases; D017386:Sequence Homology, Amino Acid; D019895:Transposases / Q000235:genetics
chemical_list: D004269:DNA, Bacterial; D045522:Recombinases; D019895:Transposases