title: 'Candidatus Helicobacter suis', a gastric helicobacter from pigs, and its phylogenetic relatedness to other gastrospirilla.
abstract: 'Gastrospirillum suis' is an uncultured, tightly spiral micro-organism that has been associated with ulcer disease in the stomachs of pigs. It was the purpose of this study to determine the phylogenetic position of 'G. suis'. Stomachs of five slaughterhouse pigs, originating from different Belgian and Dutch farms, were selected on the basis of the presence of 'G. suis'-like bacteria, as demonstrated by biochemical, immunohistochemical and electron microscopical data. Bacterial 16S rDNA was amplified by PCR using broad-range primers and five helicobacter-like sequences were determined either by direct or indirect sequence analysis. An inter-sequence homology of 99.7% was observed, suggesting that the sequences originated from strains belonging to a single species. Phylogenetic analysis of the consensus sequence placed the organism within the genus Helicobacter, where it formed a distinct sub-group together with other gastrospirillum-like bacteria (Helicobacter felis, Helicobacter bizzozeronii, Helicobacter salomonis and 'Helicobacter heilmannii' types 1 and 2). Diagnostic PCR primers and a probe were developed that differentiated the porcine sequences from all known helicobacters. These results indicate that the porcine sequences represent a single taxon within the genus Helicobacter. The low similarity level towards H. salomonis (96.6%), its closest validly named neighbour, strongly suggests that this taxon is a novel Helicobacter species. In situ hybridization experiments linked the reference sequence to the 'G. suis'-like bacteria. On the basis of these results, we propose the name 'Candidatus Helicobacter suis' for this gastric helicobacter from pigs.
authors.affiliation: Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, University of Ghent, Merelbeke, Belgium. dominic.degroote@rug.ac.be
authors.forename: D
authors.initials: D
authors.lastname: De Groote
authors.forename: L J
authors.initials: LJ
authors.lastname: van Doorn
authors.forename: R
authors.initials: R
authors.lastname: Ducatelle
authors.forename: A
authors.initials: A
authors.lastname: Verschuuren
authors.forename: F
authors.initials: F
authors.lastname: Haesebrouck
authors.forename: W G
authors.initials: WG
authors.lastname: Quint
authors.forename: K
authors.initials: K
authors.lastname: Jalava
authors.forename: P
authors.initials: P
authors.lastname: Vandamme
mesh_terms: D000818:Animals; D015373:Bacterial Typing Techniques; D004269:DNA, Bacterial / Q000235:genetics; D004275:DNA, Ribosomal / Q000235:genetics; D016998:Helicobacter / Q000145:classification* / Q000235:genetics* / Q000502:physiology / Q000648:ultrastructure; D007150:Immunohistochemistry; D017403:In Situ Hybridization; D008854:Microscopy, Electron; D008969:Molecular Sequence Data; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D013270:Stomach / Q000382:microbiology; D013552:Swine / Q000382:microbiology*; D014510:Urease / Q000378:metabolism
chemical_list: D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S; D014510:Urease