title: Synthetic lethality with conditional dbp6 alleles identifies rsa1p, a nucleoplasmic protein involved in the assembly of 60S ribosomal subunits.
abstract: Dbp6p is an essential putative ATP-dependent RNA helicase that is required for 60S-ribosomal-subunit assembly in the yeast Saccharomyces cerevisiae (D. Kressler, J. de la Cruz, M. Rojo, and P. Linder, Mol. Cell. Biol. 18:1855-1865, 1998). To identify factors that are functionally interacting with Dbp6p, we have performed a synthetic lethal screen with conditional dbp6 mutants. Here, we describe the cloning and the phenotypic analysis of the previously uncharacterized open reading frame YPL193W, which we renamed RSA1 (ribosome assembly 1). Rsa1p is not essential for cell viability; however, rsa1 null mutant strains display a slow-growth phenotype, which is exacerbated at elevated temperatures. The rsa1 null allele synthetically enhances the mild growth defect of weak dbp6 alleles and confers synthetic lethality when combined with stronger dbp6 alleles. Polysome profile analysis shows that the absence of Rsa1p results in the accumulation of half-mer polysomes. However, the pool of free 60S ribosomal subunits is only moderately decreased; this is reminiscent of polysome profiles from mutants defective in 60S-to-40S subunit joining. Pulse-chase labeling of pre-rRNA in the rsa1 null mutant strain indicates that formation of the mature 25S rRNA is decreased at the nonpermissive temperature. Interestingly, free 60S ribosomal subunits of a rsa1 null mutant strain that was grown for two generations at 37 degrees C are practically devoid of the 60S-ribosomal-subunit protein Qsr1p/Rpl10p, which is required for joining of 60S and 40S subunits (D. P. Eisinger, F. A. Dick, and B. L. Trumpower, Mol. Cell. Biol. 17:5136-5145, 1997). Moreover, the combination of the Deltarsa1 and qsr1-1 mutations leads to a strong synthetic growth inhibition. Finally, a hemagglutinin epitope-tagged Rsa1p localizes predominantly to the nucleoplasm. Together, these results point towards a function for Rsa1p in a late nucleoplasmic step of 60S-ribosomal-subunit assembly.
authors.affiliation: Département de Biochimie Médicale, Centre Médical Universitaire, 1211 Geneva 4, Switzerland.
authors.forename: D
authors.initials: D
authors.lastname: Kressler
authors.forename: M
authors.initials: M
authors.lastname: Doère
authors.forename: M
authors.initials: M
authors.lastname: Rojo
authors.forename: P
authors.initials: P
authors.lastname: Linder
mesh_terms: D000483:Alleles; D000595:Amino Acid Sequence; D002466:Cell Nucleolus; D053487:DEAD-box RNA Helicases; D005656:Fungal Proteins / Q000235:genetics / Q000378:metabolism / Q000502:physiology*; D005800:Genes, Fungal; D008969:Molecular Sequence Data; D016296:Mutagenesis; D011132:Polyribosomes; D011518:Proto-Oncogene Proteins; D020365:RNA Helicases / Q000235:genetics*; D012316:RNA Nucleotidyltransferases; D012331:RNA, Fungal / Q000096:biosynthesis; D012335:RNA, Ribosomal / Q000096:biosynthesis; D012269:Ribosomal Proteins; D012270:Ribosomes / Q000378:metabolism*; D012441:Saccharomyces cerevisiae / Q000235:genetics; D029701:Saccharomyces cerevisiae Proteins
chemical_list: D005656:Fungal Proteins; D011518:Proto-Oncogene Proteins; D012331:RNA, Fungal; D012335:RNA, Ribosomal; C093333:RPL10 protein, S cerevisiae; C402485:RSA1 protein, S cerevisiae; D012269:Ribosomal Proteins; D029701:Saccharomyces cerevisiae Proteins; C065039:RNA, ribosomal, 25S; D012316:RNA Nucleotidyltransferases; C490617:DBP6 protein, S cerevisiae; D053487:DEAD-box RNA Helicases; D020365:RNA Helicases