title: Color tuning mechanism of human red and green visual pigments.
abstract: We investigated the molecular mechanism of a rather large red shift of 31 nm in a human red pigment compared with a human green pigment. In this analysis, we paid special attention to the phenomenon of nonadditivity of spectral shifts due to substitution of the key amino acids (OH-bearing amino acids) and the phenomenon of cooperativity by which the spectral shifts due to substitution of the key amino acids in the protein environment of red pigment are about 1.5 times larger than that in the protein environment of green pigment. The analysis was made by using a model of three active sites on which the key amino acids are located and four effective sites by which the effect of the key amino acids is modified. As a result, we found that the interaction between the active sites that occurs through the repolarization of the chromophore induced by the key amino acid is essential for the nonadditivity phenomenon. We also found that the interaction between the active site and the effective site plays a major role in the cooperativity phenomenon. More directly, we say that the highly polarizable property of the chromophore is the origin of the rather large red shift in red pigment. Based on these analyses, we conclude that the interaction between the polarizable chromophore and the protein moiety has the capability of producing a significant spectral shift, at least 1000 cm-1, even by substitution of moderate polar residues of the OH-bearing amino acids.
authors.affiliation: Department of Physics, Graduate School of Science, Nagoya University, Japan. kakitani@allegro.phys.nagoya-u.ac.jp
authors.forename: T
authors.initials: T
authors.lastname: Kakitani
authors.forename: Y
authors.initials: Y
authors.lastname: Beppu
authors.forename: A
authors.initials: A
authors.lastname: Yamada
mesh_terms: D001665:Binding Sites / Q000235:genetics; D003116:Color; D006801:Humans; D066298:In Vitro Techniques; D008958:Models, Molecular; D009154:Mutation; D018462:Photobiology; D011487:Protein Conformation; D012168:Retinal Pigments / Q000737:chemistry / Q000235:genetics / Q000528:radiation effects*; D012243:Rhodopsin / Q000737:chemistry / Q000528:radiation effects; D013053:Spectrophotometry
chemical_list: D012168:Retinal Pigments; D012243:Rhodopsin