title: Identification of candidate T-cell epitopes and molecular mimics in chronic Lyme disease.
abstract: Elucidating the cellular immune response to infectious agents is a prerequisite for understanding disease pathogenesis and designing effective vaccines. In the identification of microbial T-cell epitopes, the availability of purified or recombinant bacterial proteins has been a chief limiting factor. In chronic infectious diseases such as Lyme disease, immune-mediated damage may add to the effects of direct infection by means of molecular mimicry to tissue autoantigens. Here, we describe a new method to effectively identify both microbial epitopes and candidate autoantigens. The approach combines data acquisition by positional scanning peptide combinatorial libraries and biometric data analysis by generation of scoring matrices. In a patient with chronic neuroborreliosis, we show that this strategy leads to the identification of potentially relevant T-cell targets derived from both Borrelia burgdorferi and the host. We also found that the antigen specificity of a single T-cell clone can be degenerate and yet the clone can preferentially recognize different peptides derived from the same organism, thus demonstrating that flexibility in T-cell recognition does not preclude specificity. This approach has potential applications in the identification of ligands in infectious diseases, tumors and autoimmune diseases.
authors.affiliation: Neuroimmunology Branch, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Building 10, Room 5B-16, 10 Center DR MSC 1400, Bethesda, Maryland 20892-1400, USA.
authors.forename: B
authors.initials: B
authors.lastname: Hemmer
authors.forename: B
authors.initials: B
authors.lastname: Gran
authors.forename: Y
authors.initials: Y
authors.lastname: Zhao
authors.forename: A
authors.initials: A
authors.lastname: Marques
authors.forename: J
authors.initials: J
authors.lastname: Pascal
authors.forename: A
authors.initials: A
authors.lastname: Tzou
authors.forename: T
authors.initials: T
authors.lastname: Kondo
authors.forename: I
authors.initials: I
authors.lastname: Cortese
authors.forename: B
authors.initials: B
authors.lastname: Bielekova
authors.forename: S E
authors.initials: SE
authors.lastname: Straus
authors.forename: H F
authors.initials: HF
authors.lastname: McFarland
authors.forename: R
authors.initials: R
authors.lastname: Houghten
authors.forename: R
authors.initials: R
authors.lastname: Simon
authors.forename: C
authors.initials: C
authors.lastname: Pinilla
authors.forename: R
authors.initials: R
authors.lastname: Martin
mesh_terms: D000328:Adult; D000595:Amino Acid Sequence; D000942:Antigens, Bacterial / Q000235:genetics / Q000302:isolation & purification; D001324:Autoantigens / Q000235:genetics / Q000302:isolation & purification; D001426:Bacterial Proteins / Q000235:genetics / Q000276:immunology / Q000302:isolation & purification; D015748:Borrelia burgdorferi Group / Q000235:genetics / Q000276:immunology; D002999:Clone Cells; D000939:Epitopes / Q000235:genetics / Q000302:isolation & purification*; D006801:Humans; D007111:Immunity, Cellular; D066298:In Vitro Techniques; D008193:Lyme Disease / Q000235:genetics / Q000276:immunology*; D020852:Lyme Neuroborreliosis / Q000235:genetics / Q000276:immunology; D008213:Lymphocyte Activation; D008297:Male; D018716:Molecular Mimicry / Q000235:genetics / Q000276:immunology*; D018807:Polymorphism, Single-Stranded Conformational; D013601:T-Lymphocytes / Q000276:immunology*
chemical_list: D000942:Antigens, Bacterial; D001324:Autoantigens; D001426:Bacterial Proteins; D000939:Epitopes