Modelling the catalytic reaction in human aldose reductase.
Aldose reductase (ALR2) has received considerable attention due to its possible link to long-term diabetic complications. Although crystal structures and kinetic data reveal important aspects of the reaction mechanism, details of the catalytic step are still unclear. In this paper a computer simulation study is presented that utilizes the hybrid quantum mechanical and molecular mechanical (QM-MM) potential to elucidate the nature of the hydride and proton transfer steps in the reduction of D-glyceraldehyde by ALR2. Several reaction pathways were investigated in two models with either Tyr48 or protonated His110+ acting as the potential proton donor in the active site. Calculations show that the substrate binds to ALR2 through hydrogen bonds in an orientation that facilitates the stereospecific catalytic step in both models. It is established that in the case that His110 is present in the protonated form in the native complex, it is the energetically favored proton donor compared with Tyr48 in the active pocket with neutral His110. The reaction mechanisms in the different models are discussed based on structural and energetic considerations.
Várnai
P
P
Physical and Theoretical Chemistry Laboratory, Oxford University, United Kingdom.
Richards
W G
WG
Lyne
P D
PD
D000449:Aldehyde Reductase / Q000737:chemistry* / Q000378:metabolism; D002384:Catalysis; D020134:Catalytic Domain; D004734:Energy Metabolism; D005985:Glyceraldehyde / Q000737:chemistry; D006801:Humans; D008958:Models, Molecular; D010084:Oxidation-Reduction; D055672:Static Electricity; D013237:Stereoisomerism
D005985:Glyceraldehyde; D000449:Aldehyde Reductase