title: Search for promoters for the GARP and rRNA genes of Trypanosoma congolense.
abstract: A search was conducted for transcriptional promoters in Trypanosoma congolense. A promoter test plasmid was constructed utilising the luciferase coding region flanked by the intergenic regions of a T. congolense gene encoding GARP, the glutamic acid and alanine rich protein on the surface of procyclic organisms. Using this plasmid, sequences located upstream of an 18S rRNA gene were tested in transient transfection assays for their ability to promote luciferase expression. A rRNA promoter fragment of 377 bp was identified that increases luciferase activity by as much as 35,000-fold above background levels. The rRNA transcription initiation site is located 961 bp upstream of the 18S rRNA gene and immediately downstream of 6 bp imperfect repeats. The plasmid was also used to examine sequences upstream of a GARP gene cluster in two different T. congolense strains for promoter activity. In contrast to the findings of another group, we were unable to detect promoter activity upstream of these GARP genes in either strain. We conclude that the GARP gene promoter, if it exists, has less than 0.03% (1/3000) of the activity of the rRNA promoter in this luciferase-based assay.
authors.affiliation: Department of Molecular Biology Ph.D. Program, University of Iowa, Iowa City 52242, USA.
authors.forename: N
authors.initials: N
authors.lastname: Downey
authors.forename: J E
authors.initials: JE
authors.lastname: Donelson
mesh_terms: D000818:Animals; D001483:Base Sequence; D017125:Genes, Protozoan; D017930:Genes, Reporter; D015698:Genomic Library; D008562:Membrane Glycoproteins / Q000235:genetics*; D008969:Molecular Sequence Data; D005810:Multigene Family; D011401:Promoter Regions, Genetic; D015800:Protozoan Proteins / Q000235:genetics*; D012335:RNA, Ribosomal / Q000235:genetics*; D016415:Sequence Alignment; D014348:Trypanosoma congolense / Q000235:genetics*
chemical_list: C406724:GARP protein, Trypanosoma; D008562:Membrane Glycoproteins; D015800:Protozoan Proteins; D012335:RNA, Ribosomal