title: A ribozyme that lacks cytidine.
abstract: The RNA-world hypothesis proposes that, before the advent of DNA and protein, life was based on RNA, with RNA serving as both the repository of genetic information and the chief agent of catalytic function. An argument against an RNA world is that the components of RNA lack the chemical diversity necessary to sustain life. Unlike proteins, which contain 20 different amino-acid subunits, nucleic acids are composed of only four subunits which have very similar chemical properties. Yet RNA is capable of a broad range of catalytic functions. Here we show that even three nucleic-acid subunits are sufficient to provide a substantial increase in the catalytic rate. Starting from a molecule that contained roughly equal proportions of all four nucleosides, we used in vitro evolution to obtain an RNA ligase ribozyme that lacks cytidine. This ribozyme folds into a defined structure and has a catalytic rate that is about 10(5)-fold faster than the uncatalysed rate of template-directed RNA ligation.
authors.affiliation: Department of Chemistry, The Scripps Research Institute, La Jolla, California 92037, USA.
authors.forename: J
authors.initials: J
authors.lastname: Rogers
authors.forename: G F
authors.initials: GF
authors.lastname: Joyce
mesh_terms: D001483:Base Sequence; D002384:Catalysis; D003001:Cloning, Molecular; D003562:Cytidine / Q000737:chemistry*; D019020:Directed Molecular Evolution; D014644:Genetic Variation; D008025:Ligases / Q000737:chemistry / Q000378:metabolism; D008969:Molecular Sequence Data; D016296:Mutagenesis; D009690:Nucleic Acid Conformation; D016133:Polymerase Chain Reaction; D016337:RNA, Catalytic / Q000737:chemistry* / Q000378:metabolism
chemical_list: D016337:RNA, Catalytic; D003562:Cytidine; D008025:Ligases