title: Coupled oxidation of heme covalently attached to cytochrome b562 yields a novel biliprotein.
abstract: A variant of Escherichia coli cytochrome b(562) with covalently attached heme can be converted to a biliverdin-containing protein in two distinct stages by coupled oxidation and acid hydrolysis. The first stage of coupled oxidation yields a stable verdoheme-containing protein. This verdoheme protein is unusual in three respects. First, the verdoheme group is covalently bound to the protein through a c-type thioether linkage. Second, the oxidation stops at the verdoheme stage, and finally, this is the first report of verdoheme generated from a heme protein with exclusive methionine ligation to the heme iron. In addition, the oxidation process does not require denaturation of the protein. The product has been characterized by optical spectroscopy, ESI mass spectrometry, and (1)H NMR. The NMR data show that the predominant product is the result of oxidation at the alpha-meso carbon. A collective evaluation of data on the topic suggests that the electronic structure of the heme, not protein steric effects, is the main factor in controlling the regiospecificity of the oxidation site. In the second stage of conversion to a biliprotein, we demonstrate that the verdoheme ring can be opened by treatment with aqueous formic acid to give alpha-biliverdin covalently attached to the folded protein. This product, a protein-bound linear tetrapyrrole as characterized by optical spectroscopy and mass spectrometry, is an example of a phycobilin chromophore that has not been observed previously.
authors.affiliation: Naval Research Laboratory, Washington, D.C. 20375-5342, USA.
authors.forename: J K
authors.initials: JK
authors.lastname: Rice
authors.forename: I M
authors.initials: IM
authors.lastname: Fearnley
authors.forename: P D
authors.initials: PD
authors.lastname: Barker
mesh_terms: D001120:Arginine / Q000235:genetics; D001426:Bacterial Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D001664:Biliverdine / Q000737:chemistry* / Q000378:metabolism; D003001:Cloning, Molecular; D003545:Cysteine / Q000235:genetics; D003573:Cytochrome b Group / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D004926:Escherichia coli / Q000201:enzymology / Q000235:genetics; D029968:Escherichia coli Proteins; D006418:Heme / Q000031:analogs & derivatives* / Q000737:chemistry / Q000378:metabolism; D006639:Histidine / Q000235:genetics; D006868:Hydrolysis; D008715:Methionine / Q000235:genetics; D016297:Mutagenesis, Site-Directed; D019906:Nuclear Magnetic Resonance, Biomolecular; D010084:Oxidation-Reduction; D011758:Pyrroles / Q000737:chemistry / Q000378:metabolism; D045725:Tetrapyrroles
chemical_list: D001426:Bacterial Proteins; D003573:Cytochrome b Group; D029968:Escherichia coli Proteins; D011758:Pyrroles; D045725:Tetrapyrroles; C099547:verdoheme; D006418:Heme; D006639:Histidine; C017850:cytochrome b562, E coli; D001120:Arginine; D008715:Methionine; D003545:Cysteine; D001664:Biliverdine