title: Temperature inducible beta-sheet structure in the transactivation domains of retroviral regulatory proteins of the Rev family.
abstract: The interaction of the human immunodeficiency virus type 1 (HIV-1) regulatory protein Rev with cellular cofactors is crucial for the viral life cycle. The HIV-1 Rev transactivation domain is functionally interchangeable with analog regions of Rev proteins of other retroviruses suggesting common folding patterns. In order to obtain experimental evidence for similar structural features mediating protein-protein contacts we investigated activation domain peptides from HIV-1, HIV-2, VISNA virus, feline immunodeficiency virus (FIV) and equine infectious anemia virus (EIAV) by CD spectroscopy, secondary structure prediction and sequence analysis. Although different in polarity and hydrophobicity, all peptides showed a similar behavior with respect to solution conformation, concentration dependence and variations in ionic strength and pH. Temperature studies revealed an unusual induction of beta-structure with rising temperatures in all activation domain peptides. The high stability of beta-structure in this region was demonstrated in three different peptides of the activation domain of HIV-1 Rev in solutions containing 40% hexafluoropropanol, a reagent usually known to induce alpha-helix into amino acid sequences. Sequence alignments revealed similarities between the polar effector domains from FIV and EIAV and the leucine rich (hydrophobic) effector domains found in HIV-1, HIV-2 and VISNA. Studies on activation domain peptides of two dominant negative HIV-1 Rev mutants, M10 and M32, pointed towards different reasons for the biological behavior. Whereas the peptide containing the M10 mutation (L78E79-->D78L79) showed wild-type structure, the M32 mutant peptide (L78L81L83-->A78A81A83) revealed a different protein fold to be the reason for the disturbed binding to cellular cofactors. From our data, we conclude, that the activation domain of Rev proteins from different viral origins adopt a similar fold and that a beta-structural element is involved in binding to a cellular cofactor.
authors.affiliation: Novartis Forschungsinstitut, Vienna, Austria.
authors.forename: W
authors.initials: W
authors.lastname: Thumb
authors.forename: C
authors.initials: C
authors.lastname: Graf
authors.forename: T
authors.initials: T
authors.lastname: Parslow
authors.forename: R
authors.initials: R
authors.lastname: Schneider
authors.forename: M
authors.initials: M
authors.lastname: Auer
mesh_terms: D020816:Amino Acid Motifs; D000595:Amino Acid Sequence; D002850:Chromatography, Gel / Q000379:methods; D002942:Circular Dichroism; D015694:Gene Products, rev / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D005799:Genes, Dominant; D004860:Infectious Anemia Virus, Equine / Q000737:chemistry; D008969:Molecular Sequence Data; D009154:Mutation; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D012190:Retroviridae / Q000737:chemistry*; D012997:Solvents; D013696:Temperature; D015533:Transcriptional Activation; D014790:Visna-maedi virus / Q000737:chemistry
chemical_list: D015694:Gene Products, rev; D012997:Solvents