The main role of the sequence-dependent DNA elasticity in determining the free energy of nucleosome formation on telomeric DNAs.
Using a competitive reconstitution assay, we measured the free energy spent in nucleosome formation of eight telomeric DNAs, differing in sequence and/or in length. The obtained values are in satisfactorily good agreement with those derived from a theoretical model that allows the calculation of the free energy of nucleosome formation on the basis of sequence-dependent DNA elasticity, using a statistical thermodynamic approach. Both theoretical and experimental evaluations show that telomeres are characterized by the highest free energies of nucleosome formation among all the DNA sequences so far studied. The free energy of nucleosome formation varies according to the different telomeric sequences and the length of the fragments. Theoretical analysis and experimental mapping by lambda exonuclease show that telomeric nucleosomes occupy multiple positions spaced every telomeric repeat. Sequence-dependent DNA elasticity appears as the main determinant of the stability of telomeric nucleosomes and their multiple translational positioning.
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Dipartimento di Genetica e Biologia Molecolare, Fondazione Istituto Pasteur-Fondazione Cenci Bolognetti, Università di Roma La Sapienza, Italy.
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De Santis
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Rossetti
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Savino
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D000818:Animals; D017360:Arabidopsis / Q000235:genetics; D001483:Base Sequence; D012831:Bombyx / Q000235:genetics; D016825:Chlamydomonas reinhardtii / Q000235:genetics; D004247:DNA / Q000737:chemistry*; D004271:DNA, Fungal / Q000737:chemistry; D018744:DNA, Plant / Q000737:chemistry; D016054:DNA, Protozoan / Q000737:chemistry; D004548:Elasticity; D006801:Humans; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D009707:Nucleosomes / Q000737:chemistry* / Q000235:genetics; D014176:Protein Biosynthesis; D012441:Saccharomyces cerevisiae / Q000235:genetics; D016615:Telomere / Q000737:chemistry* / Q000235:genetics; D016808:Tetrahymena thermophila / Q000235:genetics; D013816:Thermodynamics
D004271:DNA, Fungal; D018744:DNA, Plant; D016054:DNA, Protozoan; D009707:Nucleosomes; D004247:DNA