title: DNA changes in tissues entrapped in plant resins (the precursors of amber).
abstract: There have been many reports characterizing DNA from amber, which is a fossil version of plant resin. Here we report an investigation of the effects of plant resin (from Pseudotsuga menziesii) and drying conditions on the preservation of DNA in biological tissues. We examined the degree of degradation of the DNA by agarose gel electrophoresis of extracted DNA, by polymerase chain reaction, and by DNA sequencing. The plant resin alone appeared to cause little or no damage to DNA. Tissue immersed in plant resin that dried rapidly (exposed to sunlight) contained DNA with little apparent damage. Tissue immersed in the resin that was dried slowly (in shade without sunlight) contained DNA with some degradation (3.5% nucleotide changes). The tissue that was immersed in the resin that was constantly hydrated (by immersion in water) yielded DNA that was severely damaged (50-62% nucleotide changes). Transversions outnumbered transitions in these samples by a ratio of 1.4 : 1. A piece of Baltic amber immersed in water for 5 days appeared to be impervious to the water. Thus amber inclusions that initially dried rapidly have the potential to yield undamaged DNA. Those that dried slowly may contain damaged DNA and may be unsuitable for phylogenetic and other studies.
authors.affiliation: College of Environmental Science and Forestry, State University of New York, 1 Forestry Drive, Syracuse, NY 13210, USA. sorogers@mailbox.syr.edu
authors.forename: S O
authors.initials: SO
authors.lastname: Rogers
authors.forename: K
authors.initials: K
authors.lastname: Langenegger
authors.forename: O
authors.initials: O
authors.lastname: Holdenrieder
mesh_terms: D018647:Amber; D004247:DNA / Q000737:chemistry* / Q000235:genetics; D004271:DNA, Fungal / Q000737:chemistry* / Q000235:genetics; D010944:Plants; D016133:Polymerase Chain Reaction / Q000379:methods; D012116:Resins, Plant
chemical_list: D018647:Amber; D004271:DNA, Fungal; D012116:Resins, Plant; D004247:DNA