title: Molecular phylogenetics of Calamus (Palmae) and related rattan genera based on 5S nrDNA spacer sequence data.
abstract: Phylogenetic relationships among the rattan palm genera Calamus, Daemonorops, Ceratolobus, Calospatha, Pogonotium, and Retispatha were investigated using DNA sequences from the nontranscribed spacer of 5S nrDNA. Moderate levels of intragenome polymorphism were identified, indicating that concerted evolution is not completely homogenizing the multiple copies of the 5S nrDNA repeat present in the nuclear genome. The existence of intragenome polymorphism did not excessively interfere with phylogeny reconstruction because, in the majority of cases, multiple clones obtained from individual species were resolved as monophyletic groups. The highly speciose genus Calamus was found to be nonmonophyletic with all five remaining genera being embedded within it. A number of major lineages within Calamus were resolved, one of which included the monotypic genus Calospatha, another included the monotypic genus Retispatha, and a third included a monophyletic group comprising Daemonorops, Ceratolobus, and Pogonotium. While the findings indicate that generic circumscriptions require revision, a nomenclatural solution was not sought at this stage because inadequate sampling and lack of support at basal nodes suggested that the topologies obtained might not be entirely reliable. Under these circumstances, name changes to such an important group would be both unhelpful and irresponsible.
authors.affiliation: Department of Botany, University of Reading, Whiteknights, Berkshire, RG6 6AS, United Kingdom.
authors.forename: W J
authors.initials: WJ
authors.lastname: Baker
authors.forename: T A
authors.initials: TA
authors.lastname: Hedderson
authors.forename: J
authors.initials: J
authors.lastname: Dransfield
mesh_terms: D000349:Africa; D004275:DNA, Ribosomal / Q000235:genetics*; D019143:Evolution, Molecular; D014644:Genetic Variation; D016013:Likelihood Functions; D008954:Models, Biological; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D014197:Trees / Q000235:genetics*
chemical_list: D004275:DNA, Ribosomal