title: Inhibitory effects of collagen on the PCR for detection of Clostridium perfringens.
abstract: It is essential to identify specific food components that inhibit PCR in order to increase the sensitivity of the PCR method for rapid detection of pathogens contaminating a food. We found that collagen, a major component of several foods, inhibited PCR. The inhibitory action of collagen on PCR could be partially reversed by adjusting the concentration of magnesium ion in the reaction mixture and by the use of various DNA extraction methods to remove the collagen from the DNA. Also, the source of thermostable DNA polymerase was affected by the presence of collagen. These results suggest the need to optimize the extraction and assay conditions for rapid detection of enterotoxigenic Clostridium perfringens by PCR with respect to the kind of food being analyzed.
authors.affiliation: Department of Food Science and Technology, Seoul National University, Suwon, Korea.
authors.forename: S
authors.initials: S
authors.lastname: Kim
authors.forename: R G
authors.initials: RG
authors.lastname: Labbe
authors.forename: S
authors.initials: S
authors.lastname: Ryu
mesh_terms: D003016:Clostridium perfringens / Q000302:isolation & purification*; D003094:Collagen / Q000494:pharmacology*; D005188:False Negative Reactions; D005516:Food Microbiology; D016133:Polymerase Chain Reaction / Q000187:drug effects*; D011933:Reagent Kits, Diagnostic
chemical_list: D011933:Reagent Kits, Diagnostic; D003094:Collagen