title: Effects of subunit occupancy on partitioning of an intermediate in thymidylate synthase mutants.
abstract: Experimental evidence for a 5-exocyclic methylene-dUMP intermediate in the thymidylate synthase reaction was recently obtained by demonstrating that tryptophan 82 mutants of the Lactobacillus casei enzyme produced 5-(2-hydroxyethyl)thiomethyl-dUMP (HETM-dUMP) (Barret, J. E., Maltby, D. A., Santi, D. V., and Schultz, P. G. (1998) J. Am. Chem. Soc. 120, 449-450). The unusual product was proposed to emanate from trapping of the intermediate with beta-mercaptoethanol in competition with hydride transfer from H(4)folate to form dTMP. Using mutants of the C-terminal residue of thymidylate synthase, we found that the ratio of HETM-dUMP to dTMP varies as a function of CH(2)H(4)folate concentration. This observation seemed inconsistent with the conclusion that both products arose from a common intermediate in which CH(2)H(4)folate was already bound to the enzyme. The enigma was resolved by a kinetic model that allowed for differential partitioning of the intermediate formed on each of the two subunits of the homodimeric enzyme in forming the two different products. With three C-terminal mutants of L. casei TS, HETM-dUMP formation was consistent with a model in which product formation occurs upon occupancy of the first completely bound subunit, the rate of which is unaffected by occupancy of the second subunit. With one analogous E. coli TS mutant, HETM-dUMP formation occurred upon occupancy of the first subunit, but was inhibited when both subunits were occupied. With all mutants, dTMP formation occurs from occupied forms of both subunits at different rates; here, binding of cofactor to the first subunit decreased affinity for the second, but the reaction occurred faster in the enzyme form with both subunits bound to dUMP and CH(2)H(4)folate. The model resolves the apparent enigma of the cofactor-dependent product distribution and supports the conclusion that the exocyclic methylene intermediate is common to both HETM-dUMP and dTMP formation.
authors.affiliation: Departments of Biochemistry and Biophysics and Pharmaceutical Chemistry, University of California, San Francisco, California 94143-0448, USA.
authors.forename: P
authors.initials: P
authors.lastname: Variath
authors.forename: Y
authors.initials: Y
authors.lastname: Liu
authors.forename: T T
authors.initials: TT
authors.lastname: Lee
authors.forename: R M
authors.initials: RM
authors.lastname: Stroud
authors.forename: D V
authors.initials: DV
authors.lastname: Santi
mesh_terms: D000409:Alanine / Q000235:genetics; D001120:Arginine / Q000235:genetics; D002384:Catalysis; D003856:Deoxyuracil Nucleotides / Q000737:chemistry; D004926:Escherichia coli / Q000201:enzymology / Q000235:genetics; D005998:Glycine / Q000235:genetics; D007700:Kinetics; D007780:Lacticaseibacillus casei / Q000201:enzymology / Q000235:genetics; D008956:Models, Chemical; D016297:Mutagenesis, Site-Directed; D010446:Peptide Fragments / Q000737:chemistry / Q000235:genetics; D013763:Tetrahydrofolates / Q000737:chemistry; D013938:Thymidine Monophosphate / Q000737:chemistry; D013940:Thymidylate Synthase / Q000737:chemistry* / Q000235:genetics*; D014633:Valine / Q000235:genetics
chemical_list: D003856:Deoxyuracil Nucleotides; D010446:Peptide Fragments; D013763:Tetrahydrofolates; C013123:5,10-methylenetetrahydrofolic acid; D013938:Thymidine Monophosphate; D001120:Arginine; C007267:2'-deoxyuridylic acid; D013940:Thymidylate Synthase; D014633:Valine; D000409:Alanine; D005998:Glycine